Variant report

Variant	rs11177070
Chromosome Location	chr12:68530052-68530053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11177061	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11177062	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11177066	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11177067	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11177074	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11514279	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12369308	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12370401	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12370402	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104851	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2069728	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3181032	1.00[CHB][hapmap]
rs3181035	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6581791	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7296336	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7296352	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7301168	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7315177	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74099921	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74099930	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7956688	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899220	chr12:68465709-68530956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68525200-68530200	Weak transcription	Primary T cells from cord blood	blood
2	chr12:68529400-68531000	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr12:68529800-68531600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr12:68529800-68532000	Enhancers	Primary T cells fromperipheralblood	blood
5	chr12:68529800-68532400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr12:68530000-68530200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:68530000-68532000	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr12:68530000-68532200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr12:68530000-68532600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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