Variant report

Variant	rs11189324
Chromosome Location	chr10:99440517-99440518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99438863..99441857-chr10:99450914..99452904,2	MCF-7	breast:
2	chr10:99438414..99441017-chr10:99445394..99448054,2	K562	blood:
3	chr10:99431427..99433956-chr10:99439441..99442132,2	K562	blood:

Variant related genes	Relation type
ENSG00000119986	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10882983	0.90[EUR][1000 genomes]
rs10882987	0.82[EUR][1000 genomes]
rs11189312	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11189321	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12049715	0.80[EUR][1000 genomes]
rs12219065	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2065671	0.90[EUR][1000 genomes]
rs2065672	0.90[EUR][1000 genomes]
rs3818780	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4291605	0.86[EUR][1000 genomes]
rs45491602	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57574145	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7072085	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1045292	chr10:99411153-99450861	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99401800-99443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:99402000-99444600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:99409200-99444800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:99409400-99445800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:99426600-99444600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr10:99426800-99444800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:99428000-99446000	Weak transcription	Fetal Kidney	kidney
8	chr10:99429600-99443600	Weak transcription	Psoas Muscle	Psoas
9	chr10:99429800-99445400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:99432600-99440800	Strong transcription	HepG2	liver
11	chr10:99433800-99443000	Weak transcription	Right Atrium	heart
12	chr10:99434600-99441800	Weak transcription	Small Intestine	intestine
13	chr10:99434800-99441800	Weak transcription	Fetal Heart	heart
14	chr10:99435200-99443400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:99435400-99444800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr10:99435400-99446000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr10:99435600-99443400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:99435600-99445000	Weak transcription	NH-A	brain
19	chr10:99435600-99446400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:99435800-99444400	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:99435800-99444600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr10:99435800-99445000	Weak transcription	Primary T cells from cord blood	blood
23	chr10:99435800-99445400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:99435800-99446000	Weak transcription	Thymus	Thymus
25	chr10:99435800-99446200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:99436000-99444800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:99436000-99445600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:99436000-99446200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:99436000-99446200	Weak transcription	Fetal Brain Female	brain
30	chr10:99436000-99446200	Weak transcription	Fetal Thymus	thymus
31	chr10:99436200-99444800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr10:99436200-99445600	Weak transcription	Fetal Brain Male	brain
33	chr10:99436200-99446000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:99436200-99446200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:99436200-99446400	Weak transcription	Brain Germinal Matrix	brain
36	chr10:99437000-99441000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:99437000-99443200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr10:99437000-99444800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr10:99437000-99445200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr10:99437200-99443400	Weak transcription	HUVEC	blood vessel
41	chr10:99437200-99443600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:99437400-99444600	Weak transcription	Dnd41	blood
43	chr10:99437400-99445000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr10:99437600-99440800	Weak transcription	Stomach Mucosa	stomach
45	chr10:99437600-99443400	Weak transcription	Fetal Lung	lung
46	chr10:99437600-99443600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr10:99437600-99443600	Weak transcription	Brain Anterior Caudate	brain
48	chr10:99437600-99445200	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr10:99437600-99446000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr10:99437600-99446200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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