Variant report

Variant	rs11197072
Chromosome Location	chr10:116886319-116886320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1010610	0.88[EUR][1000 genomes]
rs10736240	1.00[CHB][hapmap];0.88[CHD][hapmap];0.86[TSI][hapmap]
rs10787554	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10787555	1.00[ASW][hapmap];0.96[CEU][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs10787557	0.88[CEU][hapmap]
rs10885649	0.91[EUR][1000 genomes]
rs10885651	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10885655	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10885657	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10885658	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10885659	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10885660	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10885662	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10885664	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10885669	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs10885671	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs10885672	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs10885673	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs10885675	1.00[ASW][hapmap];0.96[CEU][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs10885676	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs10885677	0.82[EUR][1000 genomes]
rs10885680	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10885681	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap]
rs10885683	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[TSI][hapmap]
rs11197066	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197071	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197081	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11197084	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11197087	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11197091	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11197093	0.88[CEU][hapmap];0.82[JPT][hapmap];0.86[TSI][hapmap]
rs11197094	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11197103	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11197107	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11197110	1.00[ASW][hapmap];0.96[CEU][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11197115	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11197122	0.96[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs11197126	1.00[CHB][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes]
rs11197127	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11197139	0.85[EUR][1000 genomes]
rs11197150	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197163	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12218100	0.96[CEU][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs12218477	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12355617	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12357053	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap]
rs12358411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs12360503	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12573443	1.00[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1264756	0.81[ASN][1000 genomes]
rs1264763	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs1264765	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs1264768	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1264774	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs1264782	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1264783	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1264794	0.96[CEU][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs1264795	0.84[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs1264796	0.88[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs1264799	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1264802	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1268460	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1268916	0.83[EUR][1000 genomes]
rs1269602	0.89[EUR][1000 genomes]
rs1270442	0.82[JPT][hapmap];0.82[TSI][hapmap]
rs1270654	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1389647	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs1537685	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1663157	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17092908	0.96[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs17722681	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1899718	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1899721	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs2152148	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2172669	0.95[CEU][hapmap];0.91[CHB][hapmap]
rs2256046	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2265930	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs2420075	0.82[EUR][1000 genomes]
rs2440313	0.85[EUR][1000 genomes]
rs2492980	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35120367	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35728982	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4752724	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs7474585	0.88[EUR][1000 genomes]
rs923907	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv982865	chr10:116879604-116886328	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11197072	ATRNL1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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