Variant report

Variant	rs11197094
Chromosome Location	chr10:116924997-116924998
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1010610	0.82[EUR][1000 genomes]
rs10787554	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10787555	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10885649	0.85[EUR][1000 genomes]
rs10885651	0.93[EUR][1000 genomes]
rs10885655	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10885657	0.85[EUR][1000 genomes]
rs10885658	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10885659	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10885660	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10885662	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10885664	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10885669	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10885671	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10885672	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10885673	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10885675	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10885676	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10885677	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10885680	0.82[EUR][1000 genomes]
rs10885681	0.84[EUR][1000 genomes]
rs10885683	0.82[EUR][1000 genomes]
rs11197066	0.91[EUR][1000 genomes]
rs11197071	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11197081	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11197084	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11197087	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197091	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11197093	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197103	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11197107	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11197110	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11197122	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11197126	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11197127	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11197139	0.89[EUR][1000 genomes]
rs11197159	0.82[EUR][1000 genomes]
rs11525277	0.84[EUR][1000 genomes]
rs12218100	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12218477	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12355617	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12358411	0.88[EUR][1000 genomes]
rs12360503	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12573443	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1264748	0.85[ASN][1000 genomes]
rs1264756	0.84[EUR][1000 genomes]
rs1264763	0.83[EUR][1000 genomes]
rs1264765	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1264768	0.81[EUR][1000 genomes]
rs1264782	0.82[EUR][1000 genomes]
rs1264794	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1264795	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1264796	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1264799	0.82[EUR][1000 genomes]
rs1264802	0.92[EUR][1000 genomes]
rs1268459	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1268460	0.81[EUR][1000 genomes]
rs1268916	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1269602	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1270442	0.85[ASN][1000 genomes]
rs1270654	0.82[EUR][1000 genomes]
rs1537685	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1663157	0.80[EUR][1000 genomes]
rs17092908	0.88[EUR][1000 genomes]
rs17722681	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1899718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1899721	0.92[EUR][1000 genomes]
rs2152148	0.93[EUR][1000 genomes]
rs2172669	0.82[EUR][1000 genomes]
rs2256046	0.88[EUR][1000 genomes]
rs2420075	0.86[EUR][1000 genomes]
rs2440313	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35120367	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35728982	0.93[EUR][1000 genomes]
rs4752724	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61880825	0.83[EUR][1000 genomes]
rs7474585	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11197094	ATRNL1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116912000-116925600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:116919800-116925800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:116923600-116925800	Weak transcription	Fetal Brain Female	brain
4	chr10:116923800-116935600	Weak transcription	Fetal Brain Male	brain
5	chr10:116924400-116927000	Weak transcription	Brain Germinal Matrix	brain
6	chr10:116924400-116936000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:116924600-116927600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:116924800-116927200	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links