Variant report

Variant	rs11197957
Chromosome Location	chr10:119091746-119091747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119090115..119092747-chr10:119129531..119131567,2	MCF-7	breast:
2	chr10:119084578..119086704-chr10:119088785..119092040,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10082463	0.87[EUR][1000 genomes]
rs10082507	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10787768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10787769	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10787772	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10886062	0.83[AMR][1000 genomes]
rs10886069	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11197938	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11197945	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197961	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11197983	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11197985	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12221325	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12243925	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12249877	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12250377	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12260782	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12414644	0.86[AMR][1000 genomes]
rs12414758	0.83[AMR][1000 genomes]
rs12571779	0.86[AMR][1000 genomes]
rs12572369	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12573252	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2283142	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2901123	0.83[AMR][1000 genomes]
rs363256	0.85[EUR][1000 genomes]
rs363262	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs363279	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs363296	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4751621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4751622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4752051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4752052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4752055	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7090219	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72825561	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs887341	0.83[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11197957	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119041400-119101200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:119043000-119094400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:119049800-119100600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:119049800-119101400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:119049800-119102400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:119050000-119093800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr10:119050000-119101600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:119060200-119093200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:119063800-119092000	Weak transcription	Fetal Stomach	stomach
10	chr10:119063800-119113200	Weak transcription	Fetal Thymus	thymus
11	chr10:119064600-119093600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:119064600-119098000	Weak transcription	HMEC	breast
13	chr10:119066800-119111600	Weak transcription	Colonic Mucosa	Colon
14	chr10:119069200-119093600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:119069200-119093600	Weak transcription	Fetal Lung	lung
16	chr10:119069200-119094200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:119069400-119104400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:119069600-119093800	Weak transcription	Thymus	Thymus
19	chr10:119069600-119095200	Weak transcription	Ovary	ovary
20	chr10:119070400-119094600	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr10:119071600-119093600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr10:119071600-119099200	Weak transcription	NH-A	brain
23	chr10:119071600-119106000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:119071800-119099200	Weak transcription	Hela-S3	cervix
25	chr10:119072000-119111200	Weak transcription	Aorta	Aorta
26	chr10:119072200-119095200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr10:119072800-119093400	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:119074400-119093800	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr10:119074600-119093800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:119076200-119099800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr10:119076400-119104800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr10:119076600-119095000	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr10:119078000-119101400	Weak transcription	NHDF-Ad	bronchial
34	chr10:119078200-119093400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr10:119078200-119093800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:119078200-119104400	Weak transcription	HSMM	muscle
37	chr10:119078400-119093400	Weak transcription	K562	blood
38	chr10:119079000-119101800	Weak transcription	NHEK	skin
39	chr10:119079400-119099200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr10:119082200-119099800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr10:119082400-119093600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr10:119082400-119093800	Weak transcription	Left Ventricle	heart
43	chr10:119082400-119118600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:119082600-119093400	Weak transcription	A549	lung
45	chr10:119082600-119102000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:119083400-119104600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr10:119083600-119093600	Weak transcription	Psoas Muscle	Psoas
48	chr10:119083600-119098800	Weak transcription	Colon Smooth Muscle	Colon
49	chr10:119085600-119102000	Weak transcription	Pancreas	Pancrea
50	chr10:119086000-119102000	Weak transcription	Gastric	stomach

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