Variant report

Variant	rs11197961
Chromosome Location	chr10:119116721-119116722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119109550..119117175-chr10:119118758..119125323,7	K562	blood:
2	chr10:119114580..119117385-chr10:119131872..119134175,2	K562	blood:

Variant related genes	Relation type
ENSG00000165650	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10082463	0.87[EUR][1000 genomes]
rs10082507	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10787768	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10787769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787772	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10886062	0.86[AMR][1000 genomes]
rs10886069	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11197938	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11197945	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197957	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11197983	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11197985	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12221325	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12243925	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12249877	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12250377	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12260782	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12414644	0.83[AMR][1000 genomes]
rs12414758	0.83[AMR][1000 genomes]
rs12571779	0.83[AMR][1000 genomes]
rs12572369	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12573252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2283142	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2901123	0.86[AMR][1000 genomes]
rs363256	0.85[EUR][1000 genomes]
rs363262	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363279	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs363296	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4751621	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4751622	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4752051	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4752052	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4752055	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7090219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825561	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs887341	0.86[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11197961	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119082400-119118600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:119100200-119131000	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:119102400-119131400	Weak transcription	Psoas Muscle	Psoas
4	chr10:119102600-119119000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:119102800-119119600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:119102800-119123600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:119105000-119118400	Weak transcription	Ovary	ovary
8	chr10:119105000-119119600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:119107200-119131400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:119109400-119130000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:119111000-119124600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr10:119111800-119129000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:119112600-119123600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:119112600-119132800	Weak transcription	Gastric	stomach
15	chr10:119113600-119118200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:119113800-119119800	Weak transcription	Brain Anterior Caudate	brain
17	chr10:119114000-119119200	Weak transcription	HMEC	breast
18	chr10:119114000-119123200	Weak transcription	Small Intestine	intestine
19	chr10:119114200-119119600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:119114200-119120800	Weak transcription	GM12878-XiMat	blood
21	chr10:119114200-119122600	Weak transcription	Brain Germinal Matrix	brain
22	chr10:119114200-119128200	Weak transcription	Thymus	Thymus
23	chr10:119114600-119119800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:119114800-119116800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:119114800-119123400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr10:119115000-119119800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr10:119115200-119117800	Weak transcription	Liver	Liver
28	chr10:119115200-119118000	Weak transcription	HepG2	liver
29	chr10:119115200-119118000	Weak transcription	K562	blood
30	chr10:119115200-119119000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr10:119115200-119119600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr10:119115200-119119600	Weak transcription	Stomach Mucosa	stomach
33	chr10:119115200-119119800	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr10:119115200-119119800	Weak transcription	Colon Smooth Muscle	Colon
35	chr10:119115200-119122000	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:119115200-119122400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:119115200-119122600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr10:119115200-119122600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr10:119115200-119122600	Weak transcription	Primary B cells from cord blood	blood
40	chr10:119115200-119123400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr10:119115200-119126600	Weak transcription	Fetal Thymus	thymus
42	chr10:119115400-119119600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr10:119115400-119119600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr10:119115400-119119800	Weak transcription	Fetal Heart	heart
45	chr10:119115400-119119800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr10:119115400-119120000	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr10:119115400-119120400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr10:119115400-119120600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr10:119115400-119122600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:119115400-119123200	Weak transcription	Primary T helper cells fromperipheralblood	blood

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