Variant report

Variant	rs11197977
Chromosome Location	chr10:119138042-119138043
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr10:119137973-119138226	HepG2	liver:	n/a	chr10:119138069-119138078

No.	Distal block	Cell Line	Cell type
1	chr10:119131695..119134660-chr10:119137923..119141249,3	K562	blood:
2	chr10:119136010..119137605-chr10:119137941..119139672,2	K562	blood:
3	chr10:119133762..119136949-chr10:119137563..119139291,3	MCF-7	breast:
4	chr10:119132609..119134947-chr10:119137026..119138733,2	K562	blood:

Variant related genes	Relation type
PDZD8	TF binding region
ENSG00000165650	Chromatin interaction

Extended variants
information (count: 120 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs1008448	0.80[ASN][1000 genomes]
rs10787770	0.88[ASN][1000 genomes]
rs10787771	0.83[ASN][1000 genomes]
rs10886061	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10886062	0.80[ASN][1000 genomes]
rs10886063	0.88[ASN][1000 genomes]
rs10886064	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10886065	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11197960	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11197968	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11197969	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11197970	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11197974	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11197976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11197981	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11498892	0.87[ASN][1000 genomes]
rs12243133	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12243628	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12247698	0.88[ASN][1000 genomes]
rs12256994	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12263512	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12269460	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12413507	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12569963	0.80[ASN][1000 genomes]
rs12573009	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1468563	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs181440	0.84[ASN][1000 genomes]
rs1860407	0.83[ASN][1000 genomes]
rs1935166	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1935167	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1935168	0.88[ASN][1000 genomes]
rs1954212	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1954213	0.91[ASN][1000 genomes]
rs2052075	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2096112	0.80[ASN][1000 genomes]
rs2153714	0.84[ASN][1000 genomes]
rs2244249	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2244375	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2255367	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2275670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2275671	0.92[ASN][1000 genomes]
rs2420457	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2429505	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2429508	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2487692	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2490626	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2490631	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532781	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532782	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532783	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532784	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532785	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532786	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532787	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532788	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532789	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2532792	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2532793	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2532795	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2532796	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2532813	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532815	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532817	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532834	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532835	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532836	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532838	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532839	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532841	0.80[ASN][1000 genomes]
rs2532842	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532844	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2794414	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2794416	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2794418	0.80[ASN][1000 genomes]
rs2794419	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2794421	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2794435	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2794436	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2803799	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2803801	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2803802	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2803803	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2803804	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2803807	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2803809	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2803810	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2803816	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2901123	0.80[ASN][1000 genomes]
rs34247425	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3523	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs363235	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs363236	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs363240	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs363242	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs363243	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs363275	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs363276	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs363278	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs363282	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3814229	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3814230	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4751623	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4752054	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4752056	0.83[ASN][1000 genomes]
rs6585431	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7070594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7072027	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7072785	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7086651	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7087395	0.88[ASN][1000 genomes]
rs7088401	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72825530	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7897828	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7898092	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7900191	0.92[ASN][1000 genomes]
rs7901203	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7902237	0.92[ASN][1000 genomes]
rs887341	0.81[ASN][1000 genomes]
rs979992	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11197977	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119136200-119138400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr10:119136200-119138400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:119136600-119138400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:119136800-119138400	Weak transcription	K562	blood
5	chr10:119138000-119138200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
6	chr10:119138000-119138200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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