Variant report

Variant	rs111990359
Chromosome Location	chr13:96281299-96281300
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900934	chr13:96255706-96327574	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3330095	chr13:96281000-96297421	Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96235600-96284200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr13:96247800-96293600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:96251400-96294400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:96256400-96295200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:96256800-96294200	Weak transcription	Placenta	Placenta
6	chr13:96260200-96293400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr13:96261200-96288400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr13:96263600-96290000	Weak transcription	Adipose Nuclei	Adipose
9	chr13:96265800-96293400	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr13:96266400-96286000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr13:96267600-96293000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:96268400-96286400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr13:96268400-96291600	Strong transcription	Osteobl	bone
14	chr13:96268800-96281400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr13:96270200-96293400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr13:96271600-96284800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr13:96272400-96292000	Weak transcription	Colonic Mucosa	Colon
18	chr13:96272600-96284000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr13:96273000-96287400	Strong transcription	Fetal Lung	lung
20	chr13:96273400-96281400	Weak transcription	Brain Hippocampus Middle	brain
21	chr13:96273400-96284000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr13:96273600-96293400	Weak transcription	Brain Substantia Nigra	brain
23	chr13:96273600-96293600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr13:96273600-96293600	Weak transcription	Left Ventricle	heart
25	chr13:96273800-96293600	Weak transcription	Gastric	stomach
26	chr13:96273800-96293600	Weak transcription	Pancreas	Pancrea
27	chr13:96274000-96281400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr13:96276800-96281400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr13:96276800-96286800	Weak transcription	Fetal Intestine Small	intestine
30	chr13:96276800-96293400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr13:96278400-96285800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr13:96278800-96290000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr13:96279000-96285200	Strong transcription	Fetal Kidney	kidney
34	chr13:96279000-96285400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr13:96279200-96285400	Strong transcription	Fetal Brain Male	brain
36	chr13:96279200-96286000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr13:96279200-96293800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr13:96279400-96285400	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr13:96279400-96285800	Strong transcription	Brain Inferior Temporal Lobe	brain
40	chr13:96279400-96292000	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr13:96279400-96293800	Weak transcription	Liver	Liver
42	chr13:96279600-96285400	Strong transcription	A549	lung
43	chr13:96279600-96285600	Strong transcription	Brain Angular Gyrus	brain
44	chr13:96279600-96286600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr13:96279600-96290200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr13:96279600-96292000	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr13:96279800-96282000	Strong transcription	Colon Smooth Muscle	Colon
48	chr13:96279800-96289400	Strong transcription	HSMM	muscle
49	chr13:96280000-96285400	Strong transcription	Brain Anterior Caudate	brain
50	chr13:96280000-96285600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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