Variant report

Variant	rs11207177
Chromosome Location	chr1:58682811-58682812
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:58649644..58651898-chr1:58682331..58684466,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10493245	1.00[YRI][hapmap]
rs10889087	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11207173	0.91[GIH][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes]
rs1213758	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1213759	0.85[AMR][1000 genomes]
rs1416342	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17116994	1.00[YRI][hapmap]
rs2406590	0.81[CEU][hapmap];0.91[GIH][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2806397	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4912183	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4912302	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4912312	0.90[CEU][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.86[LWK][hapmap];0.84[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs515683	0.91[GIH][hapmap];0.82[AMR][1000 genomes]
rs533114	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs558475	0.81[CEU][hapmap];0.91[GIH][hapmap];0.83[TSI][hapmap]
rs581861	0.90[CEU][hapmap];0.93[GIH][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs591970	0.88[GIH][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs602547	0.83[AMR][1000 genomes]
rs674913	0.95[CEU][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs674986	0.95[CEU][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs688010	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7529686	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7529800	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7545320	0.90[CEU][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.84[TSI][hapmap]
rs7550775	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs864250	0.90[CEU][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1008968	chr1:58582159-58982440	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv534974	chr1:58582159-58982440	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58675800-58694800	Weak transcription	Ovary	ovary
2	chr1:58682600-58686800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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