Variant report

Variant	rs11208927
Chromosome Location	chr1:67089561-67089562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10789212	0.95[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap]
rs10889636	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10889637	0.82[AMR][1000 genomes]
rs10889640	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap]
rs11208914	0.96[CEU][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs11208940	0.85[YRI][hapmap]
rs12027701	0.94[JPT][hapmap]
rs1445573	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs1867631	0.95[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs4655630	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs6665859	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6670827	0.83[YRI][hapmap]
rs6694782	0.85[YRI][hapmap]
rs7515444	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs7520226	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7536188	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7546090	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1221	chr1:67047908-67092696	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67058000-67092200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:67066400-67089600	Weak transcription	Brain Angular Gyrus	brain
3	chr1:67071600-67094800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:67084200-67099800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:67086400-67089600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:67087600-67090400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:67088400-67091000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:67088400-67114200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr1:67088800-67091200	Enhancers	NHDF-Ad	bronchial
10	chr1:67089000-67089600	Enhancers	Aorta	Aorta
11	chr1:67089000-67090000	Enhancers	HUVEC	blood vessel
12	chr1:67089200-67089600	Enhancers	NH-A	brain
13	chr1:67089200-67091200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr1:67089200-67091200	Enhancers	Osteobl	bone
15	chr1:67089200-67091600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:67089400-67089600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr1:67089400-67089800	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr1:67089400-67090400	Enhancers	Fetal Heart	heart
19	chr1:67089400-67090800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:67089400-67090800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:67089400-67090800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:67089400-67090800	Enhancers	Brain Cingulate Gyrus	brain
23	chr1:67089400-67090800	Enhancers	HSMMtube	muscle
24	chr1:67089400-67091000	Enhancers	Brain Hippocampus Middle	brain
25	chr1:67089400-67091200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr1:67089400-67091200	Enhancers	Brain Substantia Nigra	brain
27	chr1:67089400-67091200	Enhancers	NHLF	lung
28	chr1:67089400-67091400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:67089400-67092000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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