Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12058271	1.00[EUR][1000 genomes]
rs12070022	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12074313	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12092951	0.84[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs12096502	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12096600	0.82[ASW][hapmap]
rs12098192	1.00[EUR][1000 genomes]
rs1577367	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17131396	0.84[ASW][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap]
rs17131407	1.00[EUR][1000 genomes]
rs1932059	1.00[EUR][1000 genomes]
rs28415396	1.00[EUR][1000 genomes]
rs2992040	1.00[EUR][1000 genomes]
rs5703	0.82[ASW][hapmap]
rs60469012	1.00[AMR][1000 genomes]
rs6669890	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72926266	1.00[EUR][1000 genomes]
rs72928383	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72928385	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7516046	1.00[EUR][1000 genomes]
rs7544159	1.00[EUR][1000 genomes]
rs9662819	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3452325	chr1:71243992-71249701	Active TSS Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
2	esv3452326	chr1:71244085-71249601	Flanking Active TSS Enhancers Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
3	esv3452327	chr1:71244085-71249601	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	esv18463	chr1:71244106-71249573	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71243000-71247000	Enhancers	NHDF-Ad	bronchial
2	chr1:71243600-71245400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:71244000-71245200	Enhancers	Osteobl	bone
4	chr1:71244200-71245400	Weak transcription	NHLF	lung
5	chr1:71244800-71245400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:71244800-71245600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:71244800-71245600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:71244800-71245800	Enhancers	HSMM	muscle

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