Variant report
| Variant | rs11209704 |
|---|---|
| Chromosome Location | chr1:71304102-71304103 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CTH-2 | chr1:71303920-71304557 | XLOC_000247 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs12409292 | 0.81[EUR][1000 genomes] |
| rs1327450 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2257934 | 0.88[EUR][1000 genomes] |
| rs4523478 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs55958766 | 0.91[ASN][1000 genomes] |
| rs7555865 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1845198 | chr1:71274759-71514969 | Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv2763076 | chr1:71302563-71314457 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
