Variant report

Variant	rs11217972
Chromosome Location	chr11:120552212-120552213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10082646	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10082698	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10502240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10790390	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10790391	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10790392	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10790393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10790394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892594	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10892595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892597	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892598	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892602	0.82[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892610	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892613	0.81[CEU][hapmap]
rs10892616	0.81[CEU][hapmap]
rs11217951	1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217953	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217954	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217957	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217960	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217961	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217964	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217970	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12224951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12224987	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225737	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12225752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281001	0.81[CEU][hapmap]
rs12281008	0.81[CEU][hapmap]
rs12283240	0.81[CEU][hapmap]
rs12286467	0.81[CEU][hapmap]
rs12287882	0.81[CEU][hapmap]
rs12360673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362311	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362348	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363187	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574920	1.00[CHB][hapmap]
rs4256992	0.83[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4268524	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4367954	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4628679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61601696	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900956	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61902671	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61902672	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61902674	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934805	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934825	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934830	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7934908	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935087	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120551600-120552400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:120551800-120552400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:120551800-120552800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:120551800-120553200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:120551800-120553200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:120551800-120553200	Enhancers	Brain Germinal Matrix	brain
7	chr11:120552000-120552400	Enhancers	Fetal Brain Female	brain
8	chr11:120552000-120552400	Enhancers	Fetal Lung	lung
9	chr11:120552000-120552600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr11:120552000-120552800	Enhancers	Brain Anterior Caudate	brain
11	chr11:120552000-120553000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:120552000-120553200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr11:120552000-120553200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr11:120552000-120553200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr11:120552000-120553200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:120552000-120553400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr11:120552000-120553800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:120552200-120552400	Enhancers	H9 Cell Line	embryonic stem cell
19	chr11:120552200-120552600	Enhancers	Brain Substantia Nigra	brain
20	chr11:120552200-120552600	Enhancers	Ovary	ovary
21	chr11:120552200-120553000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr11:120552200-120553000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:120552200-120553200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr11:120552200-120553400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr11:120552200-120554400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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