Variant report

Variant	rs11228609
Chromosome Location	chr11:56250625-56250626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10466676	0.90[CEU][hapmap]
rs10896466	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11228659	0.89[CEU][hapmap]
rs11606499	0.89[CEU][hapmap]
rs11822250	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12290501	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12292656	0.90[CEU][hapmap]
rs13377528	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13377553	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1351533	1.00[CEU][hapmap]
rs1397049	0.85[CEU][hapmap]
rs1945270	0.90[CEU][hapmap];0.93[YRI][hapmap]
rs41391545	0.89[CEU][hapmap]
rs55677906	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs67907199	0.88[EUR][1000 genomes]
rs68106151	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7111150	0.89[CEU][hapmap]
rs7483053	0.90[CEU][hapmap]
rs7948303	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv1046487	chr11:56228761-56310644	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56250400-56251000	Enhancers	Fetal Intestine Small	intestine
2	chr11:56250400-56251200	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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