Variant report

Variant	rs11228656
Chromosome Location	chr11:56330546-56330547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10896497	0.83[AMR][1000 genomes]
rs10896502	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11228165	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs11228166	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs11228677	0.84[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]
rs11228700	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11228715	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs11607910	1.00[YRI][hapmap]
rs12276247	0.83[AMR][1000 genomes]
rs12363217	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12797276	1.00[YRI][hapmap]
rs12800694	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1355242	0.83[AMR][1000 genomes]
rs1397050	0.84[CHD][hapmap];0.81[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs1509997	0.85[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap]
rs17150411	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs2000932	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs35455046	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35640105	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4939077	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4939082	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56836850	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs949367	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs998544	0.86[CHB][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.82[LWK][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv468576	chr11:56299930-56420029	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv555099	chr11:56299930-56420029	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv516558	chr11:56315297-56347636	Weak transcription Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
7	esv2421725	chr11:56323407-56354044	Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
8	nsv523453	chr11:56324576-56366677	Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
9	nsv525637	chr11:56330546-56366677	Weak transcription Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11228656	ASPHD2	trans	parietal	SCAN
rs11228656	OR5AK2	cis	cerebellum	SCAN
rs11228656	SLC43A1	cis	parietal	SCAN
rs11228656	CTNND1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
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