Variant report

Variant	rs11228708
Chromosome Location	chr11:56428507-56428508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:56415487..56417805-chr11:56427719..56429875,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10501354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10736676	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10736677	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10736678	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10792038	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10792039	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10792040	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10792043	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10896501	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11228641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11228673	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11228676	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11228684	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11228686	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11228687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11228693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228694	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228698	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228701	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228759	0.90[JPT][hapmap]
rs11228760	0.90[JPT][hapmap]
rs11228763	0.90[JPT][hapmap]
rs11228769	0.90[JPT][hapmap]
rs12222989	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12223492	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12418150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12418301	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1473592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1605924	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17150739	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1945196	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1945206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1945261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1945263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1945282	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2202932	0.94[ASN][1000 genomes]
rs2511143	0.82[ASN][1000 genomes]
rs2865516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33995115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4500505	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4939061	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4939065	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4939066	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs583216	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs583589	0.82[ASN][1000 genomes]
rs584608	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs588805	0.82[ASN][1000 genomes]
rs592744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs597680	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs600187	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs611397	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs614942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs61710550	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs628524	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs637912	0.82[ASN][1000 genomes]
rs642630	0.82[ASN][1000 genomes]
rs643384	0.82[ASN][1000 genomes]
rs645351	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs646286	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs654634	0.82[ASN][1000 genomes]
rs655779	0.82[ASN][1000 genomes]
rs656565	0.82[ASN][1000 genomes]
rs6591381	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs674431	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs676901	0.82[ASN][1000 genomes]
rs688832	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7924528	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7939886	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971952	chr11:56361311-56452186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv949349	chr11:56371633-56593610	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1051853	chr11:56393347-56523720	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56427600-56428800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:56427800-56428600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:56428000-56428600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:56428000-56428600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:56428000-56428800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:56428000-56429600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:56428200-56428800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr11:56428200-56429600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:56428200-56429800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:56428400-56429200	Enhancers	HUES48 Cell Line	embryonic stem cell

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