Variant report
| Variant | rs11228713 |
|---|---|
| Chromosome Location | chr11:56438675-56438676 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr11:56438529-56438729 | MCF10A-Er-Src | breast: | n/a | n/a |
| 2 | FOS | chr11:56438563-56438809 | MCF10A-Er-Src | breast: | n/a | chr11:56438761-56438771 chr11:56438761-56438771 |
| 3 | FOS | chr11:56438607-56438815 | MCF10A-Er-Src | breast: | n/a | chr11:56438761-56438771 chr11:56438761-56438771 |
| 4 | FOS | chr11:56438603-56438866 | MCF10A-Er-Src | breast: | n/a | chr11:56438761-56438771 chr11:56438761-56438771 |
| 5 | STAT3 | chr11:56438613-56438750 | MCF10A-Er-Src | breast: | n/a | n/a |
| 6 | FOS | chr11:56438584-56438784 | MCF10A-Er-Src | breast: | n/a | chr11:56438761-56438771 chr11:56438761-56438771 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OR2AH1P | TF binding region |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs11228707 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12274677 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12276015 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12277890 | 1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap] |
| rs12280487 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12573871 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12577186 | 1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap] |
| rs1355247 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1943637 | 1.00[JPT][hapmap] |
| rs1943638 | 1.00[JPT][hapmap] |
| rs72919645 | 0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1050024 | chr11:55900482-56518943 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 52 gene(s) | inside rSNPs | diseases |
| 2 | nsv497854 | chr11:55917298-56537994 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 50 gene(s) | inside rSNPs | diseases |
| 3 | nsv971952 | chr11:56361311-56452186 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv949349 | chr11:56371633-56593610 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 5 | nsv1051853 | chr11:56393347-56523720 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
