Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10896484	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs10896486	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10896488	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs10896494	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs10896495	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs11228647	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs11228675	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs11228685	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs11228697	0.82[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs11228704	0.88[ASN][1000 genomes]
rs11228705	0.88[ASN][1000 genomes]
rs11228717	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs12225008	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs12365813	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs12786642	1.00[YRI][hapmap]
rs1397054	0.82[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs1510004	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs1792503	0.90[CEU][hapmap]
rs489338	1.00[CEU][hapmap]
rs4938835	0.91[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs500127	1.00[CEU][hapmap]
rs513995	1.00[CEU][hapmap]
rs534606	1.00[CEU][hapmap]
rs545081	1.00[CEU][hapmap]
rs563638	1.00[CEU][hapmap]
rs580006	1.00[CEU][hapmap]
rs611459	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs640953	0.93[JPT][hapmap]
rs664218	1.00[YRI][hapmap]
rs72915700	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv949349	chr11:56371633-56593610	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1051853	chr11:56393347-56523720	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv975115	chr11:56460276-56468712	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56461000-56462600	Enhancers	Rectal Mucosa Donor 29	rectum
2	chr11:56461400-56465400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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