Variant report

Variant	rs11228769
Chromosome Location	chr11:56519527-56519528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10501354	0.90[JPT][hapmap]
rs10736676	0.91[JPT][hapmap]
rs10736677	0.90[JPT][hapmap]
rs10736678	0.90[JPT][hapmap]
rs10792038	0.90[JPT][hapmap]
rs10792039	0.91[JPT][hapmap]
rs10792040	0.91[JPT][hapmap]
rs10792043	0.90[JPT][hapmap]
rs10896524	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11228673	0.81[JPT][hapmap]
rs11228676	0.90[JPT][hapmap]
rs11228687	0.91[JPT][hapmap]
rs11228693	0.90[JPT][hapmap]
rs11228706	0.90[JPT][hapmap]
rs11228708	0.90[JPT][hapmap]
rs11228759	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11228760	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11228763	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11228768	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228775	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11228776	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12223492	0.90[JPT][hapmap]
rs12417343	0.82[EUR][1000 genomes]
rs12418150	0.91[JPT][hapmap]
rs12419545	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12420430	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12420689	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473592	0.90[JPT][hapmap]
rs17151273	0.82[EUR][1000 genomes]
rs1943651	0.82[EUR][1000 genomes]
rs1945261	0.90[JPT][hapmap]
rs1945263	0.90[JPT][hapmap]
rs1945282	0.90[JPT][hapmap]
rs2865516	0.91[JPT][hapmap]
rs33995115	0.90[JPT][hapmap];1.00[YRI][hapmap]
rs3914086	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3942708	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4939061	0.90[JPT][hapmap]
rs4939065	0.90[JPT][hapmap]
rs4939066	0.90[JPT][hapmap]
rs57557188	0.82[EUR][1000 genomes]
rs57838808	0.82[ASN][1000 genomes]
rs60681477	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591381	0.91[JPT][hapmap]
rs73478456	0.89[EUR][1000 genomes]
rs7924528	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
2	nsv949349	chr11:56371633-56593610	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1051853	chr11:56393347-56523720	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1048328	chr11:56471984-56649908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	esv2830406	chr11:56481955-56650124	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv468577	chr11:56503728-56704042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
7	nsv555101	chr11:56503728-56704042	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
8	nsv983231	chr11:56516214-56543432	Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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