Variant report

Variant	rs11228968
Chromosome Location	chr11:57014485-57014486
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:57010853..57012684-chr11:57014374..57016452,2	K562	blood:
2	chr11:56923234..56925283-chr11:57012223..57015017,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10792083	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs10792085	0.85[CEU][hapmap]
rs10896595	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896597	0.94[ASN][1000 genomes]
rs10896599	0.86[ASN][1000 genomes]
rs10896602	0.85[CEU][hapmap]
rs11228975	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228976	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228978	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228980	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11228982	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11228984	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11228985	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11228988	0.86[EUR][1000 genomes]
rs11600878	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11604373	0.82[EUR][1000 genomes]
rs11604560	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604778	0.84[ASN][1000 genomes]
rs11605053	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11607817	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419065	0.89[ASN][1000 genomes]
rs12421633	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421755	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12792781	0.81[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12797769	0.96[ASN][1000 genomes]
rs17572970	0.83[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17651610	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17652078	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892963	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892964	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1939489	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1939495	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155230	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155231	0.89[ASN][1000 genomes]
rs2226613	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2276038	0.83[JPT][hapmap]
rs2511026	0.85[ASN][1000 genomes]
rs2511029	0.89[ASN][1000 genomes]
rs2511030	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2846042	0.94[ASN][1000 genomes]
rs2846049	0.83[ASN][1000 genomes]
rs2846050	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2846051	0.87[ASN][1000 genomes]
rs2851722	0.94[ASN][1000 genomes]
rs35610294	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3935068	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4384399	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4565915	0.95[ASN][1000 genomes]
rs479949	0.94[ASN][1000 genomes]
rs4938855	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4938857	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4938859	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4938861	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4939132	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs499318	0.94[ASN][1000 genomes]
rs5012051	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs519277	0.94[ASN][1000 genomes]
rs522656	0.89[ASN][1000 genomes]
rs528101	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58295319	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs590240	0.89[ASN][1000 genomes]
rs599947	0.89[ASN][1000 genomes]
rs625565	0.94[ASN][1000 genomes]
rs652016	0.92[ASN][1000 genomes]
rs654635	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6591413	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591415	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591416	0.95[ASN][1000 genomes]
rs6591417	0.95[ASN][1000 genomes]
rs7102963	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120644	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128371	0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7130252	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72921992	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7935236	0.91[ASN][1000 genomes]
rs7943761	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57005200-57016400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:57008800-57016200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:57009600-57016600	Weak transcription	Liver	Liver
4	chr11:57009800-57016400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:57010000-57016400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:57011000-57015000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:57012400-57016400	Weak transcription	K562	blood
8	chr11:57013000-57016200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:57013000-57017600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:57013200-57016200	Weak transcription	Adipose Nuclei	Adipose
11	chr11:57013200-57016200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:57013200-57016400	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:57013200-57016400	Weak transcription	Left Ventricle	heart
14	chr11:57013200-57016400	Weak transcription	Lung	lung
15	chr11:57013200-57016800	Weak transcription	HUVEC	blood vessel
16	chr11:57013400-57016400	Weak transcription	Spleen	Spleen
17	chr11:57013800-57016600	Weak transcription	Placenta	Placenta

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