Variant report

Variant	rs11230153
Chromosome Location	chr11:59896901-59896902
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59889345..59891976-chr11:59896394..59897980,2	K562	blood:
2	chr11:59524342..59526503-chr11:59895914..59898117,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs107903	0.87[EUR][1000 genomes]
rs10897009	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10897011	0.81[EUR][1000 genomes]
rs11230147	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11230155	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230180	0.81[EUR][1000 genomes]
rs1125357	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11600716	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11605427	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12226022	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12453	0.84[EUR][1000 genomes]
rs1303615	0.85[EUR][1000 genomes]
rs1303621	0.86[EUR][1000 genomes]
rs17528859	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17529983	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17602572	0.83[EUR][1000 genomes]
rs1786137	0.80[EUR][1000 genomes]
rs1813217	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1820430	0.81[EUR][1000 genomes]
rs1834549	0.81[EUR][1000 genomes]
rs1834550	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1834551	0.81[EUR][1000 genomes]
rs1834557	0.80[EUR][1000 genomes]
rs2070970	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2081545	0.81[EUR][1000 genomes]
rs2165525	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278867	0.84[EUR][1000 genomes]
rs2583471	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2583476	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2847655	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2847663	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2847664	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2847666	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2847667	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2847668	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2855017	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs483629	0.87[EUR][1000 genomes]
rs487997	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4939311	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4939312	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4939314	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs502419	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs502581	0.81[EUR][1000 genomes]
rs504272	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs510518	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs512495	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs514266	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs516478	0.81[EUR][1000 genomes]
rs521952	0.80[EUR][1000 genomes]
rs525794	0.87[EUR][1000 genomes]
rs534273	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs540170	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs555635	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs556917	0.81[EUR][1000 genomes]
rs55847558	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56201148	0.81[EUR][1000 genomes]
rs563803	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs564912	0.86[EUR][1000 genomes]
rs569046	0.87[EUR][1000 genomes]
rs574695	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs574704	0.81[EUR][1000 genomes]
rs574798	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs580817	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs581133	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs602396	0.85[EUR][1000 genomes]
rs61901691	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs652354	0.86[EUR][1000 genomes]
rs7124974	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72918674	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7926954	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7933202	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7935829	0.84[EUR][1000 genomes]
rs7946992	0.83[EUR][1000 genomes]
rs920573	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs983392	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832173	chr11:59788884-59940560	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59879400-59897600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:59892400-59897800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:59892600-59899200	Weak transcription	Fetal Intestine Large	intestine
4	chr11:59893200-59897800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:59893800-59899400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:59894000-59897400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr11:59894800-59897200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:59895000-59899200	Weak transcription	Ovary	ovary
9	chr11:59895400-59897400	Weak transcription	Stomach Mucosa	stomach
10	chr11:59895400-59907400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:59895800-59897400	Weak transcription	K562	blood
12	chr11:59895800-59899200	Weak transcription	Fetal Intestine Small	intestine
13	chr11:59896000-59897600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:59896000-59898000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:59896400-59897600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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