Variant report

Variant	rs11230179
Chromosome Location	chr11:59960392-59960393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10082619	1.00[AMR][1000 genomes]
rs10082648	1.00[AMR][1000 genomes]
rs10128741	1.00[AMR][1000 genomes]
rs10466662	1.00[AMR][1000 genomes]
rs10466683	1.00[AMR][1000 genomes]
rs10897012	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11230139	1.00[AMR][1000 genomes]
rs11230159	1.00[AMR][1000 genomes]
rs11230175	1.00[AMR][1000 genomes]
rs11230176	1.00[AMR][1000 genomes]
rs11230177	1.00[AMR][1000 genomes]
rs11230181	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11230185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11230189	1.00[AMR][1000 genomes]
rs11230191	1.00[AMR][1000 genomes]
rs11501460	1.00[AMR][1000 genomes]
rs12269729	1.00[AMR][1000 genomes]
rs12270211	1.00[AMR][1000 genomes]
rs12271072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271845	1.00[AMR][1000 genomes]
rs12271938	1.00[AMR][1000 genomes]
rs12272417	1.00[AMR][1000 genomes]
rs12274187	1.00[AMR][1000 genomes]
rs12277654	1.00[AMR][1000 genomes]
rs12278512	1.00[AMR][1000 genomes]
rs12279586	1.00[AMR][1000 genomes]
rs12281124	1.00[AMR][1000 genomes]
rs12281249	1.00[AMR][1000 genomes]
rs12281339	1.00[AMR][1000 genomes]
rs12281633	1.00[AMR][1000 genomes]
rs12282483	1.00[AMR][1000 genomes]
rs12284742	1.00[AMR][1000 genomes]
rs12285212	1.00[AMR][1000 genomes]
rs12285390	1.00[AMR][1000 genomes]
rs12286820	1.00[AMR][1000 genomes]
rs12286935	1.00[AMR][1000 genomes]
rs12287486	1.00[AMR][1000 genomes]
rs12287735	1.00[AMR][1000 genomes]
rs12288390	1.00[AMR][1000 genomes]
rs12288966	1.00[AMR][1000 genomes]
rs12289301	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12289305	1.00[AMR][1000 genomes]
rs12289397	1.00[AMR][1000 genomes]
rs12291241	1.00[AMR][1000 genomes]
rs12291355	1.00[AMR][1000 genomes]
rs12291992	1.00[AMR][1000 genomes]
rs12293784	1.00[AMR][1000 genomes]
rs12293900	1.00[AMR][1000 genomes]
rs12294265	1.00[AMR][1000 genomes]
rs12294531	1.00[AMR][1000 genomes]
rs12295325	1.00[AMR][1000 genomes]
rs12295720	1.00[AMR][1000 genomes]
rs13377336	1.00[AMR][1000 genomes]
rs1837785	1.00[AMR][1000 genomes]
rs4405337	1.00[AMR][1000 genomes]
rs57191082	1.00[AMR][1000 genomes]
rs58413906	1.00[AMR][1000 genomes]
rs59692218	1.00[AMR][1000 genomes]
rs59786720	1.00[AMR][1000 genomes]
rs60175493	1.00[AMR][1000 genomes]
rs61363655	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59950800-59961200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:59954600-59961000	Weak transcription	Fetal Intestine Large	intestine
3	chr11:59957200-59960400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr11:59960200-59965000	Enhancers	Primary monocytes fromperipheralblood	blood

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