Variant report

Variant	rs11231495
Chromosome Location	chr11:63227709-63227710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10897412	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11231453	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11231455	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11231461	0.88[AMR][1000 genomes]
rs11231463	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11231465	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2154751	0.90[ASN][1000 genomes]
rs2282479	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541583	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63225400-63227800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:63225800-63228000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr11:63225800-63228000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr11:63226400-63227800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:63227000-63228200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:63227200-63227800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:63227200-63228000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr11:63227200-63228000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr11:63227200-63228400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr11:63227400-63227800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr11:63227400-63228400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:63227400-63229000	Weak transcription	Adipose Nuclei	Adipose
13	chr11:63227600-63228400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:63227600-63229400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:63227600-63231800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:63227600-63246200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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