Variant report

Variant	rs11232508
Chromosome Location	chr11:70910472-70910473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70908146..70914464-chr11:70915141..70919274,9	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11232452	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11232477	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11232576	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11232591	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11822742	1.00[EUR][1000 genomes]
rs11826649	1.00[EUR][1000 genomes]
rs3934693	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4072326	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4943820	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4943871	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55656100	0.82[EUR][1000 genomes]
rs55690281	1.00[EUR][1000 genomes]
rs55712817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55788978	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55836628	0.82[EUR][1000 genomes]
rs55897315	1.00[EUR][1000 genomes]
rs55928066	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56162839	1.00[EUR][1000 genomes]
rs56220831	0.82[EUR][1000 genomes]
rs56255416	1.00[EUR][1000 genomes]
rs56368604	1.00[EUR][1000 genomes]
rs57007124	1.00[EUR][1000 genomes]
rs58661988	0.82[EUR][1000 genomes]
rs58984468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59417145	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs59894456	1.00[EUR][1000 genomes]
rs61037105	1.00[EUR][1000 genomes]
rs73521132	0.82[EUR][1000 genomes]
rs73521141	0.82[EUR][1000 genomes]
rs7944885	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70892000-70913000	Weak transcription	Stomach Mucosa	stomach
2	chr11:70892800-70915400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:70893200-70915400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:70895800-70917000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:70899800-70917200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:70901800-70916200	Weak transcription	Lung	lung
7	chr11:70905200-70913000	Weak transcription	Gastric	stomach
8	chr11:70905400-70910600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:70906000-70913400	Weak transcription	Liver	Liver
10	chr11:70906000-70917200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:70906000-70917200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:70906000-70928600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:70906200-70916000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:70906200-70916800	Weak transcription	Fetal Intestine Large	intestine
15	chr11:70907600-70911000	Strong transcription	Fetal Intestine Small	intestine
16	chr11:70908200-70910800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:70908200-70911600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:70908200-70917600	Strong transcription	HepG2	liver
19	chr11:70908400-70911000	Enhancers	Placenta	Placenta
20	chr11:70909200-70913600	Weak transcription	A549	lung
21	chr11:70909800-70912000	Weak transcription	Fetal Stomach	stomach
22	chr11:70909800-70912200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:70910000-70910600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:70910000-70910800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:70910000-70911000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
26	chr11:70910200-70911800	Enhancers	HSMMtube	muscle
27	chr11:70910200-70912000	Enhancers	HSMM	muscle
28	chr11:70910400-70910600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:70910400-70910600	Enhancers	Esophagus	oesophagus
30	chr11:70910400-70910800	Enhancers	Pancreas	Pancrea
31	chr11:70910400-70911000	Bivalent Enhancer	Fetal Muscle Leg	muscle
32	chr11:70910400-70911600	Enhancers	Muscle Satellite Cultured Cells	--
33	chr11:70910400-70911800	Enhancers	Fetal Kidney	kidney

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