Variant report

Variant	rs11232591
Chromosome Location	chr11:70924229-70924230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70917562..70919674-chr11:70922188..70924299,2	MCF-7	breast:
2	chr11:70921928..70927780-chr11:70960512..70964640,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162105	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11232452	0.82[AMR][1000 genomes]
rs11232477	0.82[AMR][1000 genomes]
rs11232508	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11232576	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4072326	0.82[AMR][1000 genomes]
rs4943820	0.80[AMR][1000 genomes]
rs4943871	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs55712817	0.87[AMR][1000 genomes]
rs55928066	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58984468	0.87[AMR][1000 genomes]
rs59417145	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70906000-70928600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:70917200-70932800	Weak transcription	Gastric	stomach
3	chr11:70917400-70930000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:70917400-70933600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:70917600-70925200	Weak transcription	Fetal Brain Male	brain
6	chr11:70917600-70934000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:70917800-70934000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:70918000-70924800	Weak transcription	Stomach Mucosa	stomach
9	chr11:70918000-70933600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:70920000-70934800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:70921000-70926400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:70921000-70929800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:70921000-70933600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr11:70921000-70933800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:70921800-70934000	Weak transcription	A549	lung
16	chr11:70923400-70925000	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr11:70923400-70925000	Enhancers	HSMM	muscle
18	chr11:70923600-70924800	Enhancers	Rectal Smooth Muscle	rectum
19	chr11:70923600-70924800	Enhancers	HSMMtube	muscle
20	chr11:70923600-70925600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr11:70923600-70925600	Enhancers	Fetal Lung	lung
22	chr11:70923600-70925600	Enhancers	Fetal Stomach	stomach
23	chr11:70923600-70926000	Bivalent Enhancer	Fetal Muscle Leg	muscle
24	chr11:70923800-70924400	Bivalent Enhancer	Brain Hippocampus Middle	brain
25	chr11:70923800-70924400	Genic enhancers	Fetal Intestine Small	intestine
26	chr11:70923800-70924800	Enhancers	Colon Smooth Muscle	Colon
27	chr11:70923800-70925000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr11:70923800-70926600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
29	chr11:70924000-70924400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:70924000-70924600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:70924000-70924600	Bivalent Enhancer	Brain Angular Gyrus	brain
32	chr11:70924000-70924600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
33	chr11:70924000-70924600	Enhancers	NHLF	lung
34	chr11:70924000-70924800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:70924000-70924800	Flanking Active TSS	Liver	Liver
36	chr11:70924000-70924800	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr11:70924000-70925200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:70924000-70925200	Enhancers	Fetal Intestine Large	intestine
39	chr11:70924000-70925400	Enhancers	Pancreas	Pancrea
40	chr11:70924000-70926200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr11:70924200-70924400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:70924200-70924800	Flanking Active TSS	Stomach Smooth Muscle	stomach
43	chr11:70924200-70925000	Enhancers	Duodenum Mucosa	Duodenum
44	chr11:70924200-70925200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:70924200-70925800	Genic enhancers	HepG2	liver

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