Variant report

Variant	rs11234765
Chromosome Location	chr11:86447556-86447557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:86447026..86447879-chr11:86487000..86487588,3	MCF-7	breast:
2	chr11:86430742..86432818-chr11:86447067..86449171,2	MCF-7	breast:
3	chr11:86446644..86449202-chr11:86509894..86512786,2	MCF-7	breast:
4	chr11:86446514..86448356-chr11:86449836..86452632,2	K562	blood:
5	chr11:86390068..86392498-chr11:86447333..86449140,2	MCF-7	breast:
6	chr11:86445788..86450763-chr11:86452280..86455324,5	K562	blood:
7	chr11:86445700..86450143-chr11:86450733..86453676,4	MCF-7	breast:
8	chr11:86382791..86384819-chr11:86445397..86448151,2	MCF-7	breast:
9	chr11:86446536..86448977-chr8:126441223..126442943,2	MCF-7	breast:
10	chr11:86445661..86448422-chr11:86500757..86504196,4	MCF-7	breast:
11	chr11:86442349..86444552-chr11:86447054..86448697,2	MCF-7	breast:
12	chr11:86415734..86419675-chr11:86447085..86451465,5	MCF-7	breast:
13	chr11:86447300..86456471-chr11:86483287..86490697,27	MCF-7	breast:
14	chr11:86446334..86448722-chr11:86490852..86493629,3	MCF-7	breast:
15	chr11:86445705..86457398-chr11:86504607..86518485,46	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction
ENSG00000173334	Chromatin interaction
ENSG00000151376	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10501629	1.00[CHB][hapmap]
rs10898527	0.96[EUR][1000 genomes]
rs10898528	0.96[EUR][1000 genomes]
rs10898531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs10898535	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11234753	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs11234760	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11234761	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11234767	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234768	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234769	0.87[EUR][1000 genomes]
rs11234776	0.83[EUR][1000 genomes]
rs11234777	0.80[EUR][1000 genomes]
rs11234778	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs11234785	0.81[EUR][1000 genomes]
rs11234798	1.00[CHB][hapmap]
rs11234799	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[MEX][hapmap]
rs11234804	1.00[CHD][hapmap]
rs11234806	1.00[CHB][hapmap]
rs11234818	1.00[CHB][hapmap]
rs11602353	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs11607392	1.00[CHB][hapmap]
rs11608167	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12360547	0.94[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs12362635	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365944	0.83[EUR][1000 genomes]
rs12786875	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12787853	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12791740	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs12793595	1.00[CHB][hapmap]
rs12805405	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17159941	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17758195	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs17758206	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17758334	1.00[CHB][hapmap]
rs17758376	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17758400	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17820139	1.00[CHB][hapmap]
rs1815753	1.00[CHB][hapmap]
rs2000538	1.00[CHB][hapmap]
rs2105587	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs34343472	0.96[EUR][1000 genomes]
rs35781069	0.83[EUR][1000 genomes]
rs6592313	1.00[CHB][hapmap]
rs6592314	1.00[CHB][hapmap]
rs7105597	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs7108254	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7128682	1.00[CHB][hapmap]
rs7128805	1.00[CHB][hapmap]
rs71465652	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86407000-86451600	Weak transcription	Left Ventricle	heart
2	chr11:86424200-86449800	Weak transcription	Pancreas	Pancrea
3	chr11:86446000-86448000	Flanking Active TSS	A549	lung
4	chr11:86446000-86451600	Enhancers	NHLF	lung
5	chr11:86446000-86451800	Enhancers	HUVEC	blood vessel
6	chr11:86446000-86452000	Enhancers	HSMM	muscle
7	chr11:86446000-86458000	Enhancers	HMEC	breast
8	chr11:86446200-86448000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
9	chr11:86446200-86448600	Enhancers	Fetal Brain Male	brain
10	chr11:86446200-86452000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:86446200-86452000	Enhancers	NH-A	brain
12	chr11:86446200-86452000	Enhancers	Osteobl	bone
13	chr11:86446200-86453200	Enhancers	Fetal Lung	lung
14	chr11:86446400-86447800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:86446400-86448200	Enhancers	Fetal Brain Female	brain
16	chr11:86446400-86448400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:86446400-86449000	Enhancers	HSMMtube	muscle
18	chr11:86446400-86455200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr11:86446600-86448000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:86446600-86452600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:86446600-86453400	Enhancers	Fetal Stomach	stomach
22	chr11:86446800-86447600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:86446800-86447800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:86446800-86450800	Weak transcription	Esophagus	oesophagus
25	chr11:86446800-86455400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:86447000-86447600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr11:86447000-86450000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:86447200-86448000	Enhancers	Fetal Kidney	kidney
29	chr11:86447200-86448400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:86447200-86448400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:86447200-86449000	Weak transcription	NHEK	skin
32	chr11:86447200-86450800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:86447200-86451000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr11:86447400-86447600	Flanking Active TSS	Hela-S3	cervix
35	chr11:86447400-86447600	Flanking Active TSS	NHDF-Ad	bronchial
36	chr11:86447400-86447800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr11:86447400-86448000	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr11:86447400-86448400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:86447400-86448400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:86447400-86449000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:86447400-86450200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr11:86447400-86451000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr11:86447400-86455200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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