Variant report

Variant	rs11234768
Chromosome Location	chr11:86448839-86448840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:86430742..86432818-chr11:86447067..86449171,2	MCF-7	breast:
2	chr11:86446644..86449202-chr11:86509894..86512786,2	MCF-7	breast:
3	chr11:86390068..86392498-chr11:86447333..86449140,2	MCF-7	breast:
4	chr11:86445788..86450763-chr11:86452280..86455324,5	K562	blood:
5	chr11:86445700..86450143-chr11:86450733..86453676,4	MCF-7	breast:
6	chr11:86448791..86451707-chr3:161088927..161090762,2	MCF-7	breast:
7	chr11:86446536..86448977-chr8:126441223..126442943,2	MCF-7	breast:
8	chr11:86415734..86419675-chr11:86447085..86451465,5	MCF-7	breast:
9	chr11:86447300..86456471-chr11:86483287..86490697,27	MCF-7	breast:
10	chr11:86445705..86457398-chr11:86504607..86518485,46	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction
ENSG00000173334	Chromatin interaction
ENSG00000196542	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10501629	1.00[CHB][hapmap]
rs10898527	0.92[EUR][1000 genomes]
rs10898528	0.92[EUR][1000 genomes]
rs10898531	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs10898535	1.00[CHB][hapmap]
rs11234753	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs11234760	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11234761	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11234765	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234769	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11234776	0.87[EUR][1000 genomes]
rs11234777	0.84[EUR][1000 genomes]
rs11234778	1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs11234785	0.85[EUR][1000 genomes]
rs11234798	1.00[CHB][hapmap]
rs11234799	1.00[CHB][hapmap]
rs11234806	1.00[CHB][hapmap]
rs11234818	1.00[CHB][hapmap]
rs11602353	1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs11607392	1.00[CHB][hapmap]
rs11608167	1.00[CHB][hapmap]
rs12360547	0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs12362635	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365944	0.87[EUR][1000 genomes]
rs12786875	1.00[CHB][hapmap]
rs12787853	1.00[CHB][hapmap]
rs12791740	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs12793595	1.00[CHB][hapmap]
rs12805405	1.00[CHB][hapmap]
rs17159941	1.00[CHB][hapmap]
rs17758195	1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17758206	1.00[CHB][hapmap]
rs17758334	1.00[CHB][hapmap]
rs17758376	1.00[CHB][hapmap]
rs17758400	1.00[CHB][hapmap]
rs17820139	1.00[CHB][hapmap]
rs1815753	1.00[CHB][hapmap]
rs2000538	1.00[CHB][hapmap]
rs2105587	1.00[CHB][hapmap]
rs34343472	0.92[EUR][1000 genomes]
rs35781069	0.87[EUR][1000 genomes]
rs6592313	1.00[CHB][hapmap]
rs6592314	1.00[CHB][hapmap]
rs7105597	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs7108254	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7128682	1.00[CHB][hapmap]
rs7128805	1.00[CHB][hapmap]
rs71465652	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86407000-86451600	Weak transcription	Left Ventricle	heart
2	chr11:86424200-86449800	Weak transcription	Pancreas	Pancrea
3	chr11:86446000-86451600	Enhancers	NHLF	lung
4	chr11:86446000-86451800	Enhancers	HUVEC	blood vessel
5	chr11:86446000-86452000	Enhancers	HSMM	muscle
6	chr11:86446000-86458000	Enhancers	HMEC	breast
7	chr11:86446200-86452000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:86446200-86452000	Enhancers	NH-A	brain
9	chr11:86446200-86452000	Enhancers	Osteobl	bone
10	chr11:86446200-86453200	Enhancers	Fetal Lung	lung
11	chr11:86446400-86449000	Enhancers	HSMMtube	muscle
12	chr11:86446400-86455200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr11:86446600-86452600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:86446600-86453400	Enhancers	Fetal Stomach	stomach
15	chr11:86446800-86450800	Weak transcription	Esophagus	oesophagus
16	chr11:86446800-86455400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:86447000-86450000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:86447200-86449000	Weak transcription	NHEK	skin
19	chr11:86447200-86450800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:86447200-86451000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:86447400-86449000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:86447400-86450200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:86447400-86451000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:86447400-86455200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:86447600-86451000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:86447600-86451600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:86447600-86454200	Enhancers	NHDF-Ad	bronchial
28	chr11:86447800-86449200	Enhancers	Psoas Muscle	Psoas
29	chr11:86447800-86449200	Enhancers	Stomach Smooth Muscle	stomach
30	chr11:86447800-86453400	Enhancers	Fetal Muscle Leg	muscle
31	chr11:86447800-86453800	Enhancers	Ovary	ovary
32	chr11:86448000-86449200	Enhancers	Right Atrium	heart
33	chr11:86448000-86449400	Enhancers	Colon Smooth Muscle	Colon
34	chr11:86448000-86449600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:86448000-86449800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:86448000-86449800	Enhancers	A549	lung
37	chr11:86448000-86449800	Enhancers	Hela-S3	cervix
38	chr11:86448000-86450000	Enhancers	Rectal Smooth Muscle	rectum
39	chr11:86448000-86451000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr11:86448000-86452000	Enhancers	Muscle Satellite Cultured Cells	--
41	chr11:86448200-86450800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:86448200-86451000	Weak transcription	Fetal Muscle Trunk	muscle
43	chr11:86448200-86451600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr11:86448200-86452200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:86448200-86454000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:86448400-86450000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:86448400-86451600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:86448400-86454200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:86448400-86456000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:86448600-86449000	Enhancers	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links