Variant report

Variant	rs11235461
Chromosome Location	chr11:71893699-71893700
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:71893161..71895965-chr11:71949419..71952347,2	MCF-7	breast:
2	chr11:71891814..71894783-chr11:71939408..71941980,2	MCF-7	breast:
3	chr11:71853234..71854961-chr11:71893001..71894509,2	MCF-7	breast:
4	chr11:71892089..71899767-chr11:71932198..71938426,12	MCF-7	breast:
5	chr11:71820912..71822792-chr11:71893220..71895882,2	K562	blood:
6	chr11:71812901..71816436-chr11:71891648..71895235,3	MCF-7	breast:
7	chr11:71790289..71792408-chr11:71893051..71895106,2	K562	blood:
8	chr11:71822765..71825342-chr11:71891494..71894881,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110200	Chromatin interaction
ENSG00000137497	Chromatin interaction
ENSG00000165458	Chromatin interaction
ENSG00000149357	Chromatin interaction
ENSG00000165462	Chromatin interaction
ENSG00000238768	Chromatin interaction
ENSG00000184154	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11235463	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11235465	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11235466	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12799010	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12799376	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2071010	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34030891	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34180002	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34465999	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34607504	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35954619	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36083292	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36147472	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67805606	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72966477	0.84[EUR][1000 genomes]
rs7934420	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv972042	chr11:71887920-71894534	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71888200-71895800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:71889600-71900200	Weak transcription	Fetal Intestine Small	intestine
3	chr11:71890800-71895400	Enhancers	HMEC	breast
4	chr11:71891600-71900200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:71891800-71900400	Weak transcription	Hela-S3	cervix
6	chr11:71892000-71906600	Weak transcription	Esophagus	oesophagus
7	chr11:71892400-71895000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:71892800-71894400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:71892800-71894400	Weak transcription	HSMMtube	muscle
10	chr11:71892800-71900200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:71893000-71894200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr11:71893000-71894200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:71893000-71894400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:71893000-71894400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:71893000-71894400	Weak transcription	Placenta	Placenta
16	chr11:71893000-71894400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr11:71893000-71894400	Weak transcription	Osteobl	bone
18	chr11:71893000-71900600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:71893400-71894200	Weak transcription	K562	blood
20	chr11:71893400-71894400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:71893400-71894400	Weak transcription	NHEK	skin
22	chr11:71893400-71900000	Weak transcription	Fetal Intestine Large	intestine

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