Variant report

Variant	rs11235462
Chromosome Location	chr11:71908625-71908626
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10501409	0.81[JPT][hapmap]
rs11235468	0.91[CEU][hapmap];0.85[JPT][hapmap]
rs56110841	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs651933	0.81[CHD][hapmap]
rs7938972	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11235462	FOLR3	cis	Whole Blood	GTEx
rs11235462	RP11-807H22.6	cis	Whole Blood	GTEx
rs11235462	FOLR3	cis	multi-tissue	Pritchard

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71903600-71909800	Weak transcription	Lung	lung
2	chr11:71906200-71912200	Enhancers	Placenta	Placenta
3	chr11:71907200-71909600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:71907400-71909800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:71907400-71909800	Weak transcription	Hela-S3	cervix
6	chr11:71907400-71911200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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