Variant report

Variant	rs11235465
Chromosome Location	chr11:71914145-71914146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10501409	0.80[ASN][1000 genomes]
rs11235461	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11235463	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11235466	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11235467	0.80[ASN][1000 genomes]
rs12799010	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12799376	0.82[AMR][1000 genomes]
rs2071010	1.00[CEU][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34030891	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34180002	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34465999	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34607504	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34897504	0.80[ASN][1000 genomes]
rs35954619	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36083292	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36147472	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67805606	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7934420	0.82[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	esv3322828	chr11:71910304-71914502	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71910600-71915200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr11:71914000-71914200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:71914000-71914400	Enhancers	Hela-S3	cervix
4	chr11:71914000-71920800	Enhancers	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links