Variant report

Variant	rs11235466
Chromosome Location	chr11:71914290-71914291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:71913109..71914798-chr11:71920189..71923026,2	K562	blood:
2	chr11:71911826..71915814-chr11:71931588..71936470,5	MCF-7	breast:
3	chr11:71843841..71846091-chr11:71912939..71915274,2	MCF-7	breast:
4	chr11:71912622..71915956-chr11:71917923..71921689,3	K562	blood:
5	chr11:71830114..71831813-chr11:71912584..71915054,2	MCF-7	breast:
6	chr11:71911722..71914481-chr11:71934038..71936819,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165458	Chromatin interaction
ENSG00000204971	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10751198	0.84[JPT][hapmap]
rs10898823	0.84[JPT][hapmap]
rs11235461	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11235463	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11235465	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12418074	0.84[JPT][hapmap]
rs12419500	0.84[JPT][hapmap]
rs12799010	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12799376	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1540086	0.84[JPT][hapmap]
rs1970721	0.84[JPT][hapmap]
rs2071010	1.00[CEU][hapmap];0.82[CHD][hapmap];0.83[GIH][hapmap];0.92[JPT][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34030891	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34180002	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34465999	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34607504	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35954619	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36083292	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36147472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67805606	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72966477	0.85[EUR][1000 genomes]
rs7934420	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	esv3322828	chr11:71910304-71914502	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71910600-71915200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr11:71914000-71914400	Enhancers	Hela-S3	cervix
3	chr11:71914000-71920800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:71914200-71914600	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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