Variant report

Variant	rs11235497
Chromosome Location	chr11:72144411-72144412
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:72061795..72064274-chr11:72144176..72146895,2	MCF-7	breast:
2	chr11:71812980..71815340-chr11:72143854..72146897,3	MCF-7	breast:
3	chr11:71780121..71782648-chr11:72143336..72145276,2	K562	blood:
4	chr11:71821841..71823408-chr11:72142963..72145568,2	K562	blood:
5	chr11:71813081..71815809-chr11:72144185..72147079,2	K562	blood:
6	chr11:71935149..71936719-chr11:72144197..72145744,2	K562	blood:
7	chr11:71942537..71944052-chr11:72144068..72146926,2	K562	blood:
8	chr11:72132612..72135031-chr11:72143340..72145172,3	MCF-7	breast:
9	chr11:72061191..72063131-chr11:72144186..72146277,2	K562	blood:
10	chr11:71933144..71936187-chr11:72142812..72145474,4	MCF-7	breast:
11	chr11:72017541..72019937-chr11:72142730..72145659,3	K562	blood:
12	chr11:72139109..72141965-chr11:72143740..72145610,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000256739	Chromatin interaction
ENSG00000238768	Chromatin interaction
ENSG00000149357	Chromatin interaction
ENSG00000137497	Chromatin interaction
ENSG00000162129	Chromatin interaction
ENSG00000165458	Chromatin interaction
ENSG00000110200	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11235498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72125800-72144800	Weak transcription	Fetal Kidney	kidney
2	chr11:72129400-72144800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:72129400-72145000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:72132600-72144800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:72132600-72144800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:72132800-72144800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:72133800-72145200	Weak transcription	Small Intestine	intestine
8	chr11:72136800-72144800	Weak transcription	Right Atrium	heart
9	chr11:72137400-72144800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:72137600-72144800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:72138000-72144800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:72139400-72144600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:72140000-72144800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:72140000-72144800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:72140200-72144800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:72140200-72144800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:72140200-72144800	Weak transcription	Colonic Mucosa	Colon
18	chr11:72140400-72144800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:72140600-72144800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:72140800-72144800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:72141000-72144800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:72141000-72144800	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr11:72141200-72144600	Weak transcription	A549	lung
24	chr11:72141200-72144800	Weak transcription	Left Ventricle	heart
25	chr11:72141200-72145000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr11:72141400-72144600	Weak transcription	Right Ventricle	heart
27	chr11:72141400-72144800	Weak transcription	Fetal Intestine Large	intestine
28	chr11:72141400-72145000	Weak transcription	Ovary	ovary
29	chr11:72141600-72144800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:72141600-72144800	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr11:72141600-72145000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:72141600-72145000	Weak transcription	Aorta	Aorta
33	chr11:72141600-72145000	Weak transcription	Esophagus	oesophagus
34	chr11:72141800-72144600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:72141800-72144600	Enhancers	Fetal Brain Female	brain
36	chr11:72141800-72144800	Enhancers	Brain Hippocampus Middle	brain
37	chr11:72142000-72144600	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr11:72142000-72144600	Enhancers	HMEC	breast
39	chr11:72142000-72144800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:72142000-72144800	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr11:72142200-72144600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:72142200-72144800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:72142200-72144800	Weak transcription	Fetal Intestine Small	intestine
44	chr11:72142400-72144800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr11:72142400-72144800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:72142400-72144800	Weak transcription	Thymus	Thymus
47	chr11:72142600-72144600	Weak transcription	Primary B cells from peripheral blood	blood
48	chr11:72142600-72144800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr11:72142600-72144800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr11:72142600-72144800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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