Variant report

Variant	rs11235498
Chromosome Location	chr11:72146861-72146862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000238768	Chromatin interaction
ENSG00000149357	Chromatin interaction
ENSG00000256739	Chromatin interaction
ENSG00000165458	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11235471	1.00[EUR][1000 genomes]
rs11235481	1.00[EUR][1000 genomes]
rs11235497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235517	1.00[EUR][1000 genomes]
rs11235542	1.00[EUR][1000 genomes]
rs12270774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12273286	1.00[EUR][1000 genomes]
rs12274817	1.00[EUR][1000 genomes]
rs12285652	1.00[EUR][1000 genomes]
rs12290945	1.00[EUR][1000 genomes]
rs12291899	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72145600-72147000	Weak transcription	GM12878-XiMat	blood
2	chr11:72145600-72149600	Weak transcription	NHDF-Ad	bronchial
3	chr11:72145600-72150200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:72145600-72152000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:72145600-72152600	Weak transcription	Right Atrium	heart
6	chr11:72145800-72147600	Weak transcription	Primary B cells from cord blood	blood
7	chr11:72145800-72148800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr11:72145800-72149000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:72145800-72149600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:72145800-72150200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:72145800-72150200	Weak transcription	HMEC	breast
12	chr11:72145800-72150400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:72146000-72149200	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr11:72146000-72150200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:72146000-72150200	Weak transcription	Adipose Nuclei	Adipose
16	chr11:72146000-72152000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:72146200-72150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:72146600-72148000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:72146800-72151200	Weak transcription	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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