Variant report

Variant	rs11236809
Chromosome Location	chr11:76332210-76332211
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76331643..76333160-chr11:76333362..76334961,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10899238	0.84[ASN][1000 genomes]
rs11236798	0.88[JPT][hapmap]
rs11827686	0.94[ASN][1000 genomes]
rs12222706	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1892951	1.00[ASW][hapmap];0.92[TSI][hapmap]
rs2186675	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4438063	0.89[JPT][hapmap];0.94[MEX][hapmap]
rs55959220	0.84[AMR][1000 genomes]
rs7942382	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043912	chr11:76301316-76439095	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1039451	chr11:76301316-76440221	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Atopic dermatitis	23042114	GWAS catalog

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76326800-76332800	Weak transcription	Aorta	Aorta
2	chr11:76327400-76334200	Weak transcription	Esophagus	oesophagus
3	chr11:76327600-76332600	Weak transcription	Lung	lung
4	chr11:76328200-76332400	Weak transcription	Placenta	Placenta
5	chr11:76328400-76332600	Weak transcription	Fetal Heart	heart
6	chr11:76328400-76332600	Weak transcription	Spleen	Spleen
7	chr11:76328600-76332600	Weak transcription	Left Ventricle	heart
8	chr11:76328600-76332600	Weak transcription	Right Ventricle	heart
9	chr11:76328600-76340400	Weak transcription	Right Atrium	heart
10	chr11:76328800-76333000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:76329000-76332400	Weak transcription	Ovary	ovary
12	chr11:76329400-76336600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:76329600-76332400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:76331600-76333800	Enhancers	NH-A	brain
15	chr11:76331800-76332800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:76331800-76333200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr11:76331800-76333400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:76331800-76335000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:76331800-76335000	Enhancers	Osteobl	bone
20	chr11:76331800-76335200	Enhancers	NHDF-Ad	bronchial
21	chr11:76331800-76335200	Enhancers	NHLF	lung
22	chr11:76332000-76333200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:76332000-76335000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:76332000-76340400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:76332200-76332800	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:76332200-76333000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:76332200-76336400	Enhancers	Fetal Stomach	stomach

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