Variant report

Variant	rs11236924
Chromosome Location	chr11:76467347-76467348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76466515..76473526-chr11:76475390..76481084,8	K562	blood:
2	chr11:76464979..76468586-chr11:76498537..76501368,3	MCF-7	breast:
3	chr11:76465635..76468118-chr11:76468545..76471163,2	K562	blood:

Variant related genes	Relation type
ENSG00000254632	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10160660	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10160769	0.99[EUR][1000 genomes]
rs10437754	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793194	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793195	0.99[EUR][1000 genomes]
rs10899278	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899279	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899280	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10899281	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10899282	0.99[EUR][1000 genomes]
rs10899283	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11236923	0.91[ASN][1000 genomes]
rs11236936	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12273016	0.86[EUR][1000 genomes]
rs12282785	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12290350	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12788118	0.88[EUR][1000 genomes]
rs1440977	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1440978	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1440979	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1440980	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1465900	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1837679	0.94[EUR][1000 genomes]
rs1837680	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1866843	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3758711	0.99[EUR][1000 genomes]
rs4309181	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56228827	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107409	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs737185	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7933092	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7942337	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7942368	0.98[EUR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76457000-76474600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:76459000-76469600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:76461000-76473800	Weak transcription	Small Intestine	intestine
4	chr11:76461600-76468000	Weak transcription	HSMMtube	muscle
5	chr11:76462600-76468400	Weak transcription	Fetal Brain Female	brain
6	chr11:76463800-76469200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:76464000-76469400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:76464200-76467400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:76464200-76469600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:76464200-76469800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:76464200-76470000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:76464200-76473600	Weak transcription	Right Ventricle	heart
13	chr11:76464400-76467400	Weak transcription	Fetal Brain Male	brain
14	chr11:76464600-76467400	Weak transcription	Fetal Intestine Small	intestine
15	chr11:76464600-76469800	Weak transcription	K562	blood
16	chr11:76464800-76467400	Weak transcription	Colonic Mucosa	Colon
17	chr11:76464800-76467400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:76464800-76470400	Weak transcription	A549	lung
19	chr11:76464800-76474000	Weak transcription	Left Ventricle	heart
20	chr11:76464800-76474000	Weak transcription	Spleen	Spleen
21	chr11:76464800-76474200	Weak transcription	Fetal Lung	lung
22	chr11:76465000-76467400	Weak transcription	Stomach Mucosa	stomach
23	chr11:76465000-76468600	Weak transcription	Fetal Heart	heart
24	chr11:76465200-76467400	Weak transcription	Fetal Muscle Leg	muscle
25	chr11:76465200-76469600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:76465200-76473800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:76465400-76470200	Weak transcription	Placenta	Placenta
28	chr11:76465400-76474200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:76467000-76467800	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr11:76467000-76468200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr11:76467000-76468400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:76467200-76467400	Enhancers	Brain Germinal Matrix	brain
33	chr11:76467200-76467600	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr11:76467200-76468000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:76467200-76468000	Enhancers	Duodenum Mucosa	Duodenum
36	chr11:76467200-76468200	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links