Variant report

Variant	rs11236939
Chromosome Location	chr11:76509509-76509510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:76509183-76510956	A549	lung:	n/a	n/a
2	FOSL2	chr11:76509276-76510880	A549	lung:	n/a	n/a
3	POLR2A	chr11:76509421-76510732	SK-N-MC	brain:	n/a	n/a
4	POLR2A	chr11:76509240-76510650	A549	lung:	n/a	n/a
5	POLR2A	chr11:76509174-76510664	A549	lung:	n/a	n/a
6	TCF12	chr11:76508923-76511084	A549	lung:	n/a	chr11:76510521-76510531
7	BCL3	chr11:76509394-76510915	A549	lung:	n/a	chr11:76510343-76510356
8	JUND	chr11:76509219-76510847	A549	lung:	n/a	n/a
9	POLR2A	chr11:76507572-76510760	Hela-S3	cervix:	n/a	n/a
10	SIX5	chr11:76509416-76510783	A549	lung:	n/a	n/a
11	POLR2A	chr11:76509239-76509952	HepG2	liver:	n/a	n/a
12	POLR2A	chr11:76508737-76510747	K562	blood:	n/a	n/a
13	POLR2A	chr11:76503730-76515774	A549	lung:	n/a	n/a
14	POLR2A	chr11:76508930-76510941	A549	lung:	n/a	n/a
15	POLR2A	chr11:76509341-76510696	K562	blood:	n/a	n/a
16	BCL3	chr11:76509377-76513258	A549	lung:	n/a	chr11:76513067-76513076 chr11:76510343-76510356
17	POLR2A	chr11:76509185-76510716	A549	lung:	n/a	n/a
18	POLR2A	chr11:76509353-76510701	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76492689..76500449-chr11:76507700..76515545,17	K562	blood:
2	chr11:76508809..76510616-chr11:76521166..76523251,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261578	TF binding region
ENSG00000255100	Chromatin interaction
ENSG00000182704	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10899284	1.00[EUR][1000 genomes]
rs10899285	1.00[CEU][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10899286	1.00[EUR][1000 genomes]
rs11236927	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11236938	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11236940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11236941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11236942	1.00[CEU][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1664081	0.93[YRI][hapmap]
rs61302956	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76496200-76513800	Weak transcription	Fetal Kidney	kidney
2	chr11:76496600-76509800	Weak transcription	Colon Smooth Muscle	Colon
3	chr11:76496800-76510000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:76499000-76510200	Weak transcription	Thymus	Thymus
5	chr11:76500400-76509800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:76500400-76510000	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:76500800-76510000	Weak transcription	Brain Substantia Nigra	brain
8	chr11:76503400-76510000	Weak transcription	K562	blood
9	chr11:76504200-76510000	Genic enhancers	Esophagus	oesophagus
10	chr11:76504200-76510000	Genic enhancers	Fetal Intestine Small	intestine
11	chr11:76504200-76510200	Weak transcription	HSMMtube	muscle
12	chr11:76504600-76509800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:76504600-76510000	Weak transcription	Brain Anterior Caudate	brain
14	chr11:76504600-76510000	Weak transcription	Dnd41	blood
15	chr11:76504600-76510000	Weak transcription	HUVEC	blood vessel
16	chr11:76504600-76510000	Weak transcription	NHDF-Ad	bronchial
17	chr11:76504800-76510000	Weak transcription	HSMM	muscle
18	chr11:76505000-76509600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:76505000-76509800	Weak transcription	Fetal Brain Male	brain
20	chr11:76505200-76509800	Strong transcription	Fetal Stomach	stomach
21	chr11:76505200-76510000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:76505200-76510800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:76505400-76509600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:76505400-76509800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:76505400-76510000	Weak transcription	NH-A	brain
26	chr11:76505400-76510200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:76505600-76509600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:76505600-76509800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:76505600-76509800	Strong transcription	NHEK	skin
30	chr11:76505600-76510000	Weak transcription	Right Atrium	heart
31	chr11:76506000-76509800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:76506000-76509800	Strong transcription	Fetal Brain Female	brain
33	chr11:76506000-76509800	Weak transcription	Right Ventricle	heart
34	chr11:76506200-76509600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:76506200-76509600	Strong transcription	Placenta	Placenta
36	chr11:76506400-76509800	Genic enhancers	Adipose Nuclei	Adipose
37	chr11:76506400-76509800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:76506600-76509600	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr11:76506600-76509600	Strong transcription	Brain Germinal Matrix	brain
40	chr11:76506600-76510000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:76506800-76509600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:76506800-76509800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:76507200-76511600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr11:76507400-76509800	Genic enhancers	Stomach Mucosa	stomach
45	chr11:76507400-76510000	Enhancers	Duodenum Mucosa	Duodenum
46	chr11:76507800-76509600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:76507800-76509800	Weak transcription	Fetal Lung	lung
48	chr11:76507800-76509800	Weak transcription	Osteobl	bone
49	chr11:76507800-76510000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr11:76507800-76510000	Weak transcription	Left Ventricle	heart

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