Variant report

Variant	rs11236940
Chromosome Location	chr11:76509611-76509612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr11:76509543-76510902	IMR90	lung:	n/a	n/a
2	MAX	chr11:76509183-76510956	A549	lung:	n/a	n/a
3	FOSL2	chr11:76509276-76510880	A549	lung:	n/a	n/a
4	CTCF	chr11:76509540-76509690	GM12875	blood:	n/a	n/a
5	SIN3AK20	chr11:76509582-76510501	A549	lung:	n/a	n/a
6	POLR2A	chr11:76509421-76510732	SK-N-MC	brain:	n/a	n/a
7	POLR2A	chr11:76509240-76510650	A549	lung:	n/a	n/a
8	POLR2A	chr11:76509174-76510664	A549	lung:	n/a	n/a
9	TCF12	chr11:76508923-76511084	A549	lung:	n/a	chr11:76510521-76510531
10	BCL3	chr11:76509394-76510915	A549	lung:	n/a	chr11:76510343-76510356
11	JUND	chr11:76509219-76510847	A549	lung:	n/a	n/a
12	POLR2A	chr11:76507572-76510760	Hela-S3	cervix:	n/a	n/a
13	SIX5	chr11:76509416-76510783	A549	lung:	n/a	n/a
14	POLR2A	chr11:76509239-76509952	HepG2	liver:	n/a	n/a
15	POLR2A	chr11:76508737-76510747	K562	blood:	n/a	n/a
16	POLR2A	chr11:76503730-76515774	A549	lung:	n/a	n/a
17	POLR2A	chr11:76508930-76510941	A549	lung:	n/a	n/a
18	POLR2A	chr11:76509341-76510696	K562	blood:	n/a	n/a
19	BCL3	chr11:76509377-76513258	A549	lung:	n/a	chr11:76513067-76513076 chr11:76510343-76510356
20	POLR2A	chr11:76509185-76510716	A549	lung:	n/a	n/a
21	POLR2A	chr11:76509353-76510701	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76492689..76500449-chr11:76507700..76515545,17	K562	blood:
2	chr11:76508809..76510616-chr11:76521166..76523251,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261578	TF binding region
ENSG00000182704	Chromatin interaction
ENSG00000255100	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10899284	1.00[EUR][1000 genomes]
rs10899285	1.00[EUR][1000 genomes]
rs10899286	1.00[EUR][1000 genomes]
rs11236927	0.92[EUR][1000 genomes]
rs11236938	1.00[EUR][1000 genomes]
rs11236939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11236941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11236942	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61302956	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76496200-76513800	Weak transcription	Fetal Kidney	kidney
2	chr11:76496600-76509800	Weak transcription	Colon Smooth Muscle	Colon
3	chr11:76496800-76510000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:76499000-76510200	Weak transcription	Thymus	Thymus
5	chr11:76500400-76509800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:76500400-76510000	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:76500800-76510000	Weak transcription	Brain Substantia Nigra	brain
8	chr11:76503400-76510000	Weak transcription	K562	blood
9	chr11:76504200-76510000	Genic enhancers	Esophagus	oesophagus
10	chr11:76504200-76510000	Genic enhancers	Fetal Intestine Small	intestine
11	chr11:76504200-76510200	Weak transcription	HSMMtube	muscle
12	chr11:76504600-76509800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:76504600-76510000	Weak transcription	Brain Anterior Caudate	brain
14	chr11:76504600-76510000	Weak transcription	Dnd41	blood
15	chr11:76504600-76510000	Weak transcription	HUVEC	blood vessel
16	chr11:76504600-76510000	Weak transcription	NHDF-Ad	bronchial
17	chr11:76504800-76510000	Weak transcription	HSMM	muscle
18	chr11:76505000-76509800	Weak transcription	Fetal Brain Male	brain
19	chr11:76505200-76509800	Strong transcription	Fetal Stomach	stomach
20	chr11:76505200-76510000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:76505200-76510800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:76505400-76509800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:76505400-76510000	Weak transcription	NH-A	brain
24	chr11:76505400-76510200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:76505600-76509800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:76505600-76509800	Strong transcription	NHEK	skin
27	chr11:76505600-76510000	Weak transcription	Right Atrium	heart
28	chr11:76506000-76509800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:76506000-76509800	Strong transcription	Fetal Brain Female	brain
30	chr11:76506000-76509800	Weak transcription	Right Ventricle	heart
31	chr11:76506400-76509800	Genic enhancers	Adipose Nuclei	Adipose
32	chr11:76506400-76509800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:76506600-76510000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:76506800-76509800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:76507200-76511600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr11:76507400-76509800	Genic enhancers	Stomach Mucosa	stomach
37	chr11:76507400-76510000	Enhancers	Duodenum Mucosa	Duodenum
38	chr11:76507800-76509800	Weak transcription	Fetal Lung	lung
39	chr11:76507800-76509800	Weak transcription	Osteobl	bone
40	chr11:76507800-76510000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr11:76507800-76510000	Weak transcription	Left Ventricle	heart
42	chr11:76508000-76509800	Weak transcription	Lung	lung
43	chr11:76508000-76510000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr11:76508000-76510800	Weak transcription	Aorta	Aorta
45	chr11:76508200-76509800	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr11:76508200-76509800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr11:76508200-76510000	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:76508200-76510000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:76508200-76510000	Enhancers	Colonic Mucosa	Colon
50	chr11:76508200-76510200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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