Variant report

Variant	rs11236942
Chromosome Location	chr11:76514420-76514421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76492689..76500449-chr11:76507700..76515545,17	K562	blood:
2	chr11:76480920..76483626-chr11:76511768..76514623,2	MCF-7	breast:
3	chr11:76493164..76499691-chr11:76510608..76517041,14	MCF-7	breast:
4	chr11:76504723..76506635-chr11:76511764..76514522,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TSKU-1	chr11:76511408-76515599	ENSG00000261578.1

Variant related genes	Relation type
ENSG00000182704	Chromatin interaction
ENSG00000255100	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10899284	1.00[EUR][1000 genomes]
rs10899285	0.91[ASW][hapmap];1.00[CEU][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10899286	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11236927	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11236938	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11236939	1.00[CEU][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11236940	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11236941	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1664081	0.82[ASW][hapmap];0.81[YRI][hapmap]
rs61302956	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76508800-76515200	Enhancers	Liver	Liver
2	chr11:76509800-76515600	Enhancers	Stomach Mucosa	stomach
3	chr11:76509800-76515800	Enhancers	Pancreas	Pancrea
4	chr11:76510600-76520200	Enhancers	Adipose Nuclei	Adipose
5	chr11:76510800-76515600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:76510800-76516000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:76510800-76516000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:76510800-76516000	Weak transcription	NHEK	skin
9	chr11:76510800-76516200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:76510800-76516200	Weak transcription	Left Ventricle	heart
11	chr11:76510800-76516200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:76510800-76517600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:76510800-76518000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:76510800-76518200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:76510800-76518200	Weak transcription	Right Ventricle	heart
16	chr11:76510800-76518200	Weak transcription	NH-A	brain
17	chr11:76510800-76521200	Weak transcription	Spleen	Spleen
18	chr11:76511000-76515400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr11:76511000-76516000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:76511000-76516000	Weak transcription	HMEC	breast
21	chr11:76511000-76518000	Weak transcription	Brain Substantia Nigra	brain
22	chr11:76511000-76521200	Weak transcription	HUVEC	blood vessel
23	chr11:76511000-76521400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:76511200-76518400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:76511800-76514800	Weak transcription	K562	blood
26	chr11:76511800-76517400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:76511800-76518200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:76511800-76518400	Weak transcription	Colonic Mucosa	Colon
29	chr11:76511800-76521200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:76512200-76515200	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr11:76512400-76518200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:76512400-76518200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:76512800-76514600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr11:76512800-76515200	Enhancers	NHLF	lung
35	chr11:76512800-76517000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:76512800-76518200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr11:76512800-76518200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:76512800-76518600	Enhancers	A549	lung
39	chr11:76513000-76516200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:76513000-76517200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:76513000-76517800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:76513000-76518000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:76513000-76518200	Weak transcription	Fetal Intestine Small	intestine
44	chr11:76513000-76518600	Weak transcription	Fetal Intestine Large	intestine
45	chr11:76513400-76516800	Enhancers	Primary T cells from cord blood	blood
46	chr11:76513600-76514600	Enhancers	Ovary	ovary
47	chr11:76513600-76515200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:76513600-76515400	Enhancers	Fetal Lung	lung
49	chr11:76513600-76518200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr11:76513600-76520200	Enhancers	Placenta	Placenta

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