Variant report

Variant	rs11237036
Chromosome Location	chr11:76675524-76675525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10736811	0.83[ASN][1000 genomes]
rs10736812	0.81[EUR][1000 genomes]
rs10751270	0.81[EUR][1000 genomes]
rs10751271	0.81[EUR][1000 genomes]
rs10793223	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10793224	0.81[EUR][1000 genomes]
rs10793225	0.81[EUR][1000 genomes]
rs10793226	0.81[EUR][1000 genomes]
rs10793227	0.81[EUR][1000 genomes]
rs10793228	0.80[EUR][1000 genomes]
rs10793229	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10793230	0.81[EUR][1000 genomes]
rs10793231	0.81[EUR][1000 genomes]
rs10793232	0.81[EUR][1000 genomes]
rs10899333	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899340	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10899341	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10899343	0.81[EUR][1000 genomes]
rs10899344	0.81[EUR][1000 genomes]
rs11237052	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12223659	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12286501	0.81[EUR][1000 genomes]
rs12286600	0.82[EUR][1000 genomes]
rs1517907	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1517908	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1517909	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1517910	0.81[EUR][1000 genomes]
rs1589126	0.81[EUR][1000 genomes]
rs1607287	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1878630	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1945083	0.81[EUR][1000 genomes]
rs1945086	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1969315	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2090524	0.81[EUR][1000 genomes]
rs2156770	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2826	0.81[EUR][1000 genomes]
rs3740764	0.81[EUR][1000 genomes]
rs3740765	0.81[EUR][1000 genomes]
rs3740767	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3781697	0.81[EUR][1000 genomes]
rs3824889	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3851191	0.81[EUR][1000 genomes]
rs3914687	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4145048	0.81[EUR][1000 genomes]
rs4460836	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4944131	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4944132	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4944134	0.81[EUR][1000 genomes]
rs4945127	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4945129	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4945132	0.81[EUR][1000 genomes]
rs4945133	0.81[EUR][1000 genomes]
rs6592683	0.81[ASN][1000 genomes]
rs6592689	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6592690	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6592691	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6592692	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6592694	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7105694	0.81[EUR][1000 genomes]
rs7107505	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7110305	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7110532	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7113647	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7113778	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7119492	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7121273	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7121920	0.81[EUR][1000 genomes]
rs7123496	0.81[EUR][1000 genomes]
rs7123694	0.80[EUR][1000 genomes]
rs7123723	0.81[EUR][1000 genomes]
rs7127936	0.81[EUR][1000 genomes]
rs7128038	0.81[EUR][1000 genomes]
rs7129388	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7925652	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7926122	0.81[EUR][1000 genomes]
rs7926409	0.81[EUR][1000 genomes]
rs7927367	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7927731	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7931646	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7931869	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7940782	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7940972	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7943913	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7950001	0.83[EUR][1000 genomes]
rs949339	0.81[EUR][1000 genomes]
rs949340	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1042924	chr11:76659477-76709407	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1040833	chr11:76667160-76709407	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv396	chr11:76670116-76702745	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3508597	chr11:76671304-76676202	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3508598	chr11:76671304-76676202	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv498761	chr11:76672826-76677823	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76631400-76688400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:76645800-76683800	Weak transcription	Esophagus	oesophagus
3	chr11:76646600-76688000	Weak transcription	HMEC	breast
4	chr11:76650600-76681200	Weak transcription	Brain Substantia Nigra	brain
5	chr11:76655800-76681800	Weak transcription	Primary B cells from cord blood	blood
6	chr11:76656200-76677000	Weak transcription	Brain Anterior Caudate	brain
7	chr11:76657000-76676600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:76657200-76688400	Weak transcription	Gastric	stomach
9	chr11:76660000-76710800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr11:76665800-76688400	Weak transcription	Right Ventricle	heart
11	chr11:76666800-76677600	Weak transcription	Hela-S3	cervix
12	chr11:76666800-76695400	Weak transcription	NHEK	skin
13	chr11:76672200-76675800	Weak transcription	Spleen	Spleen
14	chr11:76672200-76676800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:76672200-76677200	Weak transcription	Ovary	ovary
16	chr11:76672200-76682600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:76672200-76697800	Weak transcription	Left Ventricle	heart
18	chr11:76672400-76696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:76673000-76675600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr11:76673000-76689600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:76673400-76676000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:76673400-76676000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
23	chr11:76673800-76690400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:76674000-76688600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:76674200-76676600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr11:76674200-76683800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:76674400-76696000	Weak transcription	Small Intestine	intestine
28	chr11:76675000-76677000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:76675000-76681400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:76675000-76682000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:76675000-76683800	Weak transcription	Placenta	Placenta
32	chr11:76675000-76688600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:76675000-76689800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:76675000-76691600	Weak transcription	Fetal Lung	lung
35	chr11:76675000-76721800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr11:76675000-76725600	Weak transcription	A549	lung
37	chr11:76675000-76729600	Weak transcription	Brain Angular Gyrus	brain
38	chr11:76675200-76675600	Weak transcription	Fetal Stomach	stomach
39	chr11:76675200-76675800	Weak transcription	Fetal Kidney	kidney
40	chr11:76675200-76676000	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr11:76675200-76676800	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr11:76675200-76677200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:76675200-76677200	Weak transcription	Adipose Nuclei	Adipose
44	chr11:76675200-76677400	Weak transcription	Brain Hippocampus Middle	brain
45	chr11:76675200-76677600	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:76675200-76678600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:76675200-76681800	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr11:76675200-76682600	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr11:76675200-76682800	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr11:76675200-76684000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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