Variant report

Variant	rs11238675
Chromosome Location	chr10:44230203-44230204
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44222418..44225154-chr10:44227350..44232031,4	K562	blood:
2	chr10:44222418..44225154-chr10:44229616..44232031,2	K562	blood:

Variant related genes	Relation type
ENSG00000271173	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10899858	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899859	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899881	1.00[ASN][1000 genomes]
rs10899885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238591	1.00[ASN][1000 genomes]
rs11238605	1.00[ASN][1000 genomes]
rs11238628	1.00[ASN][1000 genomes]
rs11238635	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238638	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238645	1.00[ASN][1000 genomes]
rs11238647	1.00[ASN][1000 genomes]
rs11238664	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs11238673	1.00[ASN][1000 genomes]
rs11238674	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238677	1.00[ASN][1000 genomes]
rs11238678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238679	1.00[ASN][1000 genomes]
rs11238689	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238695	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238704	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238711	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11591525	1.00[ASN][1000 genomes]
rs11592645	1.00[ASN][1000 genomes]
rs11598020	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263722	1.00[ASN][1000 genomes]
rs12358200	1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[ASN][1000 genomes]
rs17154006	1.00[ASN][1000 genomes]
rs17154012	1.00[ASN][1000 genomes]
rs17154020	1.00[ASN][1000 genomes]
rs17447133	1.00[ASN][1000 genomes]
rs17447468	1.00[ASN][1000 genomes]
rs17447580	1.00[ASN][1000 genomes]
rs17463850	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005094	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34966945	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41313824	1.00[ASN][1000 genomes]
rs57740712	1.00[ASN][1000 genomes]
rs59220072	1.00[ASN][1000 genomes]
rs61859177	1.00[ASN][1000 genomes]
rs61859178	1.00[ASN][1000 genomes]
rs61859179	1.00[ASN][1000 genomes]
rs61859180	1.00[ASN][1000 genomes]
rs61859181	1.00[ASN][1000 genomes]
rs61859182	1.00[ASN][1000 genomes]
rs61859185	1.00[ASN][1000 genomes]
rs61859203	1.00[ASN][1000 genomes]
rs61859204	1.00[ASN][1000 genomes]
rs61859207	1.00[ASN][1000 genomes]
rs61859221	1.00[ASN][1000 genomes]
rs61859388	1.00[ASN][1000 genomes]
rs61859402	1.00[ASN][1000 genomes]
rs61861561	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61861563	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61861566	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61861567	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61861585	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7903467	1.00[ASN][1000 genomes]
rs7903833	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906484	1.00[ASN][1000 genomes]
rs7913352	1.00[ASN][1000 genomes]
rs7916345	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11238675	GPRIN2	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44228000-44235400	Weak transcription	Right Atrium	heart
2	chr10:44229800-44231000	Weak transcription	NHDF-Ad	bronchial
3	chr10:44230000-44232400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:44230200-44231800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:44230200-44231800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr10:44230200-44231800	Enhancers	Osteobl	bone

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