Variant report

Variant	rs1124010
Chromosome Location	chr8:10595502-10595503
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10582500..10584094-chr8:10592919..10595783,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10089615	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10092781	0.81[CHB][hapmap]
rs10097283	0.86[CHB][hapmap]
rs10100265	0.91[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs10105487	0.90[JPT][hapmap]
rs10113343	0.83[CHB][hapmap]
rs1073913	0.84[ASN][1000 genomes]
rs10903330	0.85[JPT][hapmap]
rs1115866	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs11250073	0.96[CHB][hapmap];0.89[JPT][hapmap]
rs11250074	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs11250077	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs11250080	0.80[JPT][hapmap]
rs11993903	0.81[JPT][hapmap]
rs12542888	0.86[CHB][hapmap]
rs12676417	0.85[JPT][hapmap]
rs13276026	0.81[ASN][1000 genomes]
rs1897207	0.81[ASN][1000 genomes]
rs1968400	0.84[ASN][1000 genomes]
rs1968401	0.84[ASN][1000 genomes]
rs2116093	0.83[ASN][1000 genomes]
rs2116095	0.81[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2409663	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2409669	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs2409672	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2409674	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2409675	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898248	0.96[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs2898251	0.83[ASN][1000 genomes]
rs4240670	0.89[JPT][hapmap]
rs4321967	0.96[CHB][hapmap];0.90[JPT][hapmap]
rs4504595	0.84[CEU][hapmap]
rs4840512	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4840513	0.84[ASN][1000 genomes]
rs4840516	0.85[JPT][hapmap]
rs4840517	0.85[JPT][hapmap]
rs4841436	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4841437	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57076989	0.84[ASN][1000 genomes]
rs6601513	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6601521	0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs6601522	1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs6601523	0.82[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs6601525	0.83[CHB][hapmap]
rs6601529	0.85[JPT][hapmap]
rs6601530	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs6984744	0.82[ASN][1000 genomes]
rs6989370	0.83[ASN][1000 genomes]
rs6993841	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6995692	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs7002117	0.83[ASN][1000 genomes]
rs7002282	0.85[JPT][hapmap]
rs7005905	0.82[CHB][hapmap]
rs718741	0.84[ASN][1000 genomes]
rs718742	0.83[ASN][1000 genomes]
rs752446	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs765658	0.84[ASN][1000 genomes]
rs7814757	0.80[JPT][hapmap]
rs7826189	0.82[CHB][hapmap]
rs7834466	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs9329231	0.83[ASN][1000 genomes]
rs9969626	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1015932	chr8:10357101-10597856	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1022582	chr8:10571218-10636162	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv539468	chr8:10571218-10636162	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv1026802	chr8:10576444-10754489	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
8	nsv539469	chr8:10576444-10754489	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
9	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
10	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10594800-10598800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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