Variant report

Variant	rs11241420
Chromosome Location	chr5:116661975-116661976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10068349	0.83[ASN][1000 genomes]
rs10079309	0.83[ASN][1000 genomes]
rs10463690	0.81[ASN][1000 genomes]
rs10478339	0.81[ASN][1000 genomes]
rs12652528	0.84[ASN][1000 genomes]
rs1565889	0.83[ASN][1000 genomes]
rs1565890	0.83[ASN][1000 genomes]
rs1565892	0.83[ASN][1000 genomes]
rs1976282	0.83[ASN][1000 genomes]
rs2036024	0.81[ASN][1000 genomes]
rs2220858	0.81[ASN][1000 genomes]
rs2900101	0.83[ASN][1000 genomes]
rs4331937	0.83[ASN][1000 genomes]
rs4435900	0.83[ASN][1000 genomes]
rs59971160	0.85[EUR][1000 genomes]
rs6595028	0.85[ASN][1000 genomes]
rs7711942	0.87[AFR][1000 genomes]
rs7711947	0.87[AFR][1000 genomes]
rs7712165	0.81[ASN][1000 genomes]
rs7729190	0.90[AFR][1000 genomes]
rs7729469	0.81[AFR][1000 genomes]
rs7729480	0.87[AFR][1000 genomes]
rs7732328	0.81[ASN][1000 genomes]
rs7735145	0.93[ASN][1000 genomes]
rs7735868	0.93[ASN][1000 genomes]
rs7736463	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv599486	chr5:116607979-116669707	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv882755	chr5:116647725-116748877	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116661600-116662200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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