Variant report

Variant	rs11242759
Chromosome Location	chr6:2365878-2365879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11242760	0.92[ASN][1000 genomes]
rs11242761	0.92[ASN][1000 genomes]
rs12189730	0.84[ASN][1000 genomes]
rs12209801	0.89[ASN][1000 genomes]
rs12525582	0.90[ASN][1000 genomes]
rs12526475	0.89[ASN][1000 genomes]
rs12527624	0.90[ASN][1000 genomes]
rs35612673	0.92[ASN][1000 genomes]
rs71552116	0.92[ASN][1000 genomes]
rs71552117	0.92[ASN][1000 genomes]
rs764345	0.88[ASN][1000 genomes]
rs9503155	0.92[ASN][1000 genomes]
rs9503161	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531295	chr6:1773436-2724986	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
2	nsv883388	chr6:2093432-2514911	Strong transcription Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
3	nsv883389	chr6:2093432-2776303	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
4	nsv1021573	chr6:2246721-2832408	Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	80 gene(s)	inside rSNPs	diseases
5	nsv538102	chr6:2246721-2832408	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	80 gene(s)	inside rSNPs	diseases
6	nsv883390	chr6:2265344-2584919	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv883391	chr6:2282747-2507448	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:2339200-2370000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:2344400-2377400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:2352400-2376400	Weak transcription	HSMMtube	muscle
4	chr6:2353800-2376400	Weak transcription	Pancreas	Pancrea
5	chr6:2354200-2366800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:2354200-2367200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:2354200-2371600	Weak transcription	Right Ventricle	heart
8	chr6:2354200-2376400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:2356200-2369800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:2356200-2382200	Weak transcription	Aorta	Aorta
11	chr6:2356600-2382800	Weak transcription	Psoas Muscle	Psoas
12	chr6:2358000-2370000	Weak transcription	Esophagus	oesophagus
13	chr6:2360400-2379600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:2361400-2370000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:2362200-2370600	Weak transcription	Fetal Stomach	stomach
16	chr6:2362400-2371400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:2362400-2376800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:2362400-2391800	Weak transcription	Fetal Intestine Small	intestine
19	chr6:2362400-2397200	Weak transcription	Liver	Liver
20	chr6:2362600-2367200	Weak transcription	Ovary	ovary
21	chr6:2362800-2397200	Weak transcription	Left Ventricle	heart
22	chr6:2363600-2366800	Weak transcription	Fetal Lung	lung

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