Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178058360..178060808-chr5:178094532..178097215,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10056621	0.99[ASN][1000 genomes]
rs10058176	0.99[ASN][1000 genomes]
rs10058250	0.99[ASN][1000 genomes]
rs10058375	0.98[ASN][1000 genomes]
rs10058458	0.99[ASN][1000 genomes]
rs10058523	0.99[ASN][1000 genomes]
rs10060075	0.99[ASN][1000 genomes]
rs10063438	0.99[ASN][1000 genomes]
rs11249557	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11249560	0.99[ASN][1000 genomes]
rs11249561	0.99[ASN][1000 genomes]
rs11249562	0.99[ASN][1000 genomes]
rs11249563	0.99[ASN][1000 genomes]
rs11739297	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11740168	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11749636	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17081588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4246822	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs55662282	0.99[ASN][1000 genomes]
rs6600945	1.00[TSI][hapmap]
rs6889262	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7725805	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1023697	chr5:178070594-178126328	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537972	chr5:178070594-178126328	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv5155	chr5:178075100-178132799	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178094000-178095800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr5:178094400-178095800	Enhancers	Placenta	Placenta
3	chr5:178095000-178101000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:178095200-178095600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:178095200-178095600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr5:178095400-178096200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr5:178095400-178096200	Bivalent Enhancer	K562	blood

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