Variant report

Variant	rs11249961
Chromosome Location	chr8:9689501-9689502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10098119	0.87[EUR][1000 genomes]
rs11249959	0.81[AFR][1000 genomes]
rs11249963	0.93[EUR][1000 genomes]
rs11783922	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12114434	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114435	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114977	1.00[ASN][1000 genomes]
rs12540961	0.99[ASN][1000 genomes]
rs12547274	0.99[ASN][1000 genomes]
rs12548657	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12550323	1.00[ASN][1000 genomes]
rs13251619	1.00[ASN][1000 genomes]
rs13260533	1.00[ASN][1000 genomes]
rs1567837	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17150534	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17150543	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2048653	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2048654	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2409618	1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs28538374	0.86[EUR][1000 genomes]
rs4840447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4840448	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4841215	0.89[ASW][hapmap];0.82[LWK][hapmap];0.83[MKK][hapmap]
rs61060597	0.85[EUR][1000 genomes]
rs6601383	1.00[CEU][hapmap]
rs6980545	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6984624	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6984939	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6987405	0.83[EUR][1000 genomes]
rs6988507	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7002962	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7006010	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7010154	0.91[LWK][hapmap]
rs7018379	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73662549	0.86[EUR][1000 genomes]
rs7823438	0.96[ASN][1000 genomes]
rs9644712	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9657510	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv16865	chr8:9642195-9712807	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9688200-9690400	Enhancers	HepG2	liver

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