Variant report

Variant	rs11249963
Chromosome Location	chr8:9706751-9706752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10098119	0.81[EUR][1000 genomes]
rs11249961	0.93[EUR][1000 genomes]
rs11783922	0.82[EUR][1000 genomes]
rs12114434	0.98[EUR][1000 genomes]
rs12114435	0.98[EUR][1000 genomes]
rs12548657	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2048653	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2048654	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2409618	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28538374	0.88[EUR][1000 genomes]
rs4840447	0.98[EUR][1000 genomes]
rs4840448	0.93[EUR][1000 genomes]
rs73662549	0.88[EUR][1000 genomes]
rs7814068	0.83[ASN][1000 genomes]
rs7823438	0.80[AMR][1000 genomes]
rs9644712	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9657510	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv16865	chr8:9642195-9712807	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9704800-9707200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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