Variant report

Variant	rs112515539
Chromosome Location	chr13:30970178-30970179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30963591..30965165-chr13:30969250..30971365,2	MCF-7	breast:
2	chr13:30968958..30971854-chr13:30981722..30984094,2	MCF-7	breast:
3	chr13:30968472..30970868-chr13:30994775..30998357,4	MCF-7	breast:
4	chr1:35330757..35333004-chr13:30969945..30972502,2	MCF-7	breast:
5	chr13:30969352..30972567-chr13:31037950..31040897,3	MCF-7	breast:
6	chr13:30968769..30970411-chr13:31191447..31193805,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189403	Chromatin interaction
ENSG00000225039	Chromatin interaction
ENSG00000132952	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530602	chr13:30911025-31404272	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv2363988	chr13:30969969-30970465	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	esv3407886	chr13:30970018-30970181	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	esv3343249	chr13:30970031-30970245	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	esv3373911	chr13:30970037-30970397	Flanking Active TSS Active TSS Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
6	esv3426189	chr13:30970061-30970424	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
7	esv3488885	chr13:30970077-30970347	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
8	esv3488887	chr13:30970077-30970347	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
9	esv3508541	chr13:30970097-30970358	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
10	esv3508552	chr13:30970097-30970358	Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30968400-30970200	Active TSS	Right Atrium	heart
2	chr13:30968400-30970200	Flanking Active TSS	Dnd41	blood
3	chr13:30968600-30970200	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr13:30968600-30970200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:30968600-30970200	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr13:30968600-30970200	Active TSS	Stomach Smooth Muscle	stomach
7	chr13:30968600-30970200	Flanking Active TSS	GM12878-XiMat	blood
8	chr13:30968600-30970400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:30968600-30970400	Active TSS	Osteobl	bone
10	chr13:30968600-30970800	Active TSS	Duodenum Mucosa	Duodenum
11	chr13:30968800-30970200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr13:30968800-30970200	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr13:30968800-30970200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr13:30968800-30970200	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr13:30968800-30970200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
16	chr13:30968800-30970200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr13:30968800-30970200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr13:30968800-30970200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr13:30968800-30970200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr13:30968800-30970200	Active TSS	Aorta	Aorta
21	chr13:30968800-30970200	Active TSS	Brain Angular Gyrus	brain
22	chr13:30968800-30970200	Active TSS	Brain Cingulate Gyrus	brain
23	chr13:30968800-30970200	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr13:30968800-30970200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr13:30968800-30970200	Active TSS	Brain Substantia Nigra	brain
26	chr13:30968800-30970200	Active TSS	Colonic Mucosa	Colon
27	chr13:30968800-30970200	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr13:30968800-30970200	Active TSS	Fetal Intestine Large	intestine
29	chr13:30968800-30970200	Active TSS	Fetal Kidney	kidney
30	chr13:30968800-30970200	Active TSS	Fetal Lung	lung
31	chr13:30968800-30970200	Active TSS	Fetal Stomach	stomach
32	chr13:30968800-30970200	Active TSS	Psoas Muscle	Psoas
33	chr13:30968800-30970200	Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr13:30968800-30970200	Active TSS	NH-A	brain
35	chr13:30968800-30970200	Active TSS	NHDF-Ad	bronchial
36	chr13:30968800-30970200	Active TSS	NHLF	lung
37	chr13:30968800-30970400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr13:30968800-30970400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr13:30968800-30970600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr13:30968800-30970600	Active TSS	A549	lung
41	chr13:30968800-30970800	Active TSS	Brain Anterior Caudate	brain
42	chr13:30968800-30970800	Active TSS	Brain Hippocampus Middle	brain
43	chr13:30969000-30970200	Active TSS	Adipose Nuclei	Adipose
44	chr13:30969000-30970400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr13:30969000-30970400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr13:30969000-30970400	Active TSS	Rectal Mucosa Donor 31	rectum
47	chr13:30969000-30970400	Flanking Active TSS	HUVEC	blood vessel
48	chr13:30969000-30970800	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr13:30969200-30970200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr13:30969200-30970200	Flanking Active TSS	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links