Variant report

Variant	rs11252330
Chromosome Location	chr10:4129283-4129284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4124093..4126058-chr10:4126935..4129373,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10430774	1.00[EUR][1000 genomes]
rs10904189	0.82[ASN][1000 genomes]
rs10904191	0.82[ASN][1000 genomes]
rs11252210	1.00[EUR][1000 genomes]
rs11252215	1.00[EUR][1000 genomes]
rs11252216	1.00[EUR][1000 genomes]
rs11252233	1.00[EUR][1000 genomes]
rs11252234	1.00[EUR][1000 genomes]
rs11252246	1.00[EUR][1000 genomes]
rs11252247	1.00[EUR][1000 genomes]
rs11252248	1.00[EUR][1000 genomes]
rs11252251	1.00[EUR][1000 genomes]
rs11252254	1.00[EUR][1000 genomes]
rs11252255	1.00[EUR][1000 genomes]
rs11252256	1.00[EUR][1000 genomes]
rs11252261	1.00[EUR][1000 genomes]
rs11252262	1.00[EUR][1000 genomes]
rs11252263	1.00[EUR][1000 genomes]
rs11252266	1.00[EUR][1000 genomes]
rs11252269	1.00[EUR][1000 genomes]
rs11252272	1.00[EUR][1000 genomes]
rs11252276	1.00[EUR][1000 genomes]
rs11252278	1.00[EUR][1000 genomes]
rs11252282	1.00[EUR][1000 genomes]
rs11252289	1.00[EUR][1000 genomes]
rs11252296	1.00[EUR][1000 genomes]
rs11252298	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11252299	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11252310	1.00[EUR][1000 genomes]
rs11252311	1.00[EUR][1000 genomes]
rs11252314	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252325	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252328	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252339	0.89[ASN][1000 genomes]
rs11252343	0.82[ASN][1000 genomes]
rs11252347	1.00[JPT][hapmap]
rs11252350	0.82[ASN][1000 genomes]
rs11252351	0.82[ASN][1000 genomes]
rs11594373	0.82[ASN][1000 genomes]
rs12049638	0.94[ASN][1000 genomes]
rs12049792	0.89[ASN][1000 genomes]
rs12218553	1.00[EUR][1000 genomes]
rs12219136	1.00[EUR][1000 genomes]
rs12219589	1.00[EUR][1000 genomes]
rs12220113	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12220390	0.94[ASN][1000 genomes]
rs12221033	1.00[EUR][1000 genomes]
rs12242929	0.94[ASN][1000 genomes]
rs17131994	1.00[EUR][1000 genomes]
rs4880662	0.94[ASN][1000 genomes]
rs7068909	1.00[EUR][1000 genomes]
rs7096904	0.94[ASN][1000 genomes]
rs8181281	1.00[EUR][1000 genomes]
rs9888070	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4128400-4129600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:4128600-4129400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr10:4129000-4129400	Enhancers	Left Ventricle	heart
4	chr10:4129000-4135600	Weak transcription	Ovary	ovary
5	chr10:4129200-4129400	Enhancers	Fetal Heart	heart

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