Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10508276	0.82[ASW][hapmap]
rs10904189	0.83[ASN][1000 genomes]
rs10904191	0.83[ASN][1000 genomes]
rs11252298	1.00[JPT][hapmap]
rs11252299	1.00[JPT][hapmap]
rs11252314	0.89[ASN][1000 genomes]
rs11252325	0.89[ASN][1000 genomes]
rs11252328	0.89[ASN][1000 genomes]
rs11252330	0.89[ASN][1000 genomes]
rs11252343	0.83[ASN][1000 genomes]
rs11252346	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11252347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11252350	0.83[ASN][1000 genomes]
rs11252351	0.83[ASN][1000 genomes]
rs11592324	0.82[ASW][hapmap]
rs11594373	0.83[ASN][1000 genomes]
rs12049638	0.94[ASN][1000 genomes]
rs12049792	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12220390	0.94[ASN][1000 genomes]
rs12242929	0.94[ASN][1000 genomes]
rs17256445	0.87[YRI][hapmap]
rs17341098	0.87[YRI][hapmap]
rs4880662	0.94[ASN][1000 genomes]
rs7096904	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11252339	UCN3	cis	cerebellum	SCAN
rs11252339	TUBAL3	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4132600-4148600	Weak transcription	Gastric	stomach

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