Variant report

Variant	rs11252377
Chromosome Location	chr10:4201439-4201440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12259410	0.96[EUR][1000 genomes]
rs17350653	0.90[JPT][hapmap]
rs4881298	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4881300	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59778746	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68154769	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7071854	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7913465	0.98[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7923955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4194000-4203400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4201000-4201800	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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